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AP Biology Molecular genetic Flashcards

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6142156632Griffith's bacterial transformation-____________(answer is guys name and name of experiment) experiment in 1927 revealed that harmless bacteria have the ability to transform themselves into virulent bacteria by absorbing some genetic factor from another bacterium0
6142166432Avery, Macleod, and McCarty-isolated and purified Griffith's bacterial transformation factor and proved that it was, in fact, DNA1
6142173872Hershey and Chase-carried out experiments that lent strong support to the theory that DNA is the genetic material -Tagged bacteriophages with isotopes P32 and S35 -proved that DNA from the phage nucleus, not protein from the phage coat, was infecting bacteria2
6142186471Rosalind Franklin-while working in Maurice Wilkin's lab, she carried out X-ray crystallography analysis of DNA that showed DNA to be a helix3
6142197771Watson and Crick-1953-proposed the double-helix structure of DNA -Received the Nobel Prize for their work -hypothesized that DNA might replicate by semiconservative replication4
6142203810Meselson and Stahl-proved that DNA replicates in a semiconservative fashion, confirming Watson and Crick's hypothesis -Cultured bacteria in a medium containing heavy nitrogen(N15) and then a medium containing light nitrogen(N14); after extracting the DNA, they demonstrated that the replicated DNA consisted of one heavy strand and one light strand5
6142220935semiconservative replication-DNA replicates in a semiconservative fashion, as proven by Meselson and Stahl6
6142227309DNA-__________(abbreviation is the answer)is a polymer, repeating sequences of nucleotides: A, T, C, and G -double helix consists of 2 strands running in opposite directions: 5' to 3' and 3' to 5'7
6142509960RNA-ribonucleic acid -consists of the sugar ribose; phosphate; a nitrogen base: adenine(A), cytosine(c), guanine(G), or uracil(U)8
6142518266mRNA-relays the DNA message to the ribosome9
6142520368tRNA-cloverleaf shape, carries amino acids to mRNA at the ribosome10
6142524096SiRNA-small interfering RNA -blocks gene transmission -small interfering RNA11
6142526333miRNA-degrades specific mRNA molecules or blocks them12
6142531719nucleotideconsists of phosphate, a 5 carbon sugar(deoxyribose or ribose), and a nitrogen base(A, T, C, G, or U found in RNA, not DNA)13
6142540894DNA replication-occurs during the S phase of the cell cycle in semiconservative fashion -begins at multiple ORIGINS OF REPLICATION in eukaryote14
6142546108RNA primer-short RNA strand -is the starting point for DNA synthesis=initiation site of replication15
6142550762replication forksreplication proceeds in both directions from a replication bubble, forming 2 _____________16
6142555346DNA polymeraseforms 2 new strands in the 5' to 3' direction17
6142560272leading strandforms continuously toward the fork18
6142562412lagging strandforms AWAY from the replication fork in discontinous segments called Okazaki fragments19
6142565599okazaki fragmentsdiscontinuous segments20
6142568916helicaseuntwists double helix at replication fork21
6142570951single-stranded binding proteinsscaffolding that holds two strands of DNA apart as they are copied22
6142574469topoisomeraselessen tension on tightly wound DNA23
6142577090DNA ligasejoins okazaki fragments together24
6142579218primaseenzyme that joins RNA nucleotides to make primer25
6142581089DNA polymerase-adds nucleotides only to 3' end of an existing strand(RNA primer) -proofreads new strands and carries out mismatch repair26
6142596088transcriptionthe process by which DNA makes RNA -consists of 3 stages: initiation, elongation, termination -initial transcript is the unprocessed version of mRNA27
6142597787transcription unitstretch of DNA that is transcribed28
6142597789initiation-first step of RNA transcription -RNA polymerase binds to DNA at the promoter29
6142600218elongation-second step of RNA transcription -RNA polymerase adds nucleotides to the 3' end of a growing chain30
6142603480termination-third and last step of RNA transcription -stops after the termination sequence31
6142621847RNA processing-occurs before the newly transcribed mRNA(initial transcript) leaves the nucleus -noncoding regions of mRNA are removed by snRNPS and spliceosomes -5' cap of modified guanine nucleotide is added to 5' end of mRNA -Poly-A tail is added to 3' end of mRNA -Both 5' cap and poly-A tail protect the mRNA strand from enzymatic degradation and help the strand attach to the ribosome32
6142628544intronsnoncoding regions of mRNA33
6142643455exonsthe mRNA strand that leaves the nucleus is much smaller than the inital transcript and contains only____________.34
6142654333translation-the process by which a codon sequence of mRNA is made into an amino acid sequence -GTP(guanosine triphosphate) supplies energy for this process -64 codons on mRNA are translated into 20 amino acids -consists of 3 stages: initiation, elongation, and termination35
6142666620amino acids, tRNA, mRNA_______________ from the cytoplasm are carried by _________ to the codons of ___________ at the ribosomes36
6142668922AUG-the "start reading" codon that begins every mRNA strand is?(Three nitrogenous bases)37
6142676853UAA, UAG, and UGA"stop" codons that end every mRNA strand are called?38
6142683116wobble-the relaxation of base-pairing rules for the third nucleotide -EX; UCU, UCC, UCA, and UCG all code for the same amino acid, serine -therefore, a mutation in a gene does not necessarily express itself as a change in amino acid sequence39
6142693880introns-intervening sequence -do not code for any protein -are removed during RNA processing -found in eukaryotic DNA; not present in bacterial DNA40
6142701235exons-expressed sequences=genes -code for polypeptide41
6142707202alternative splicing-different RNA molecules are produced from the same transcript depending on which RNA segments are treated as introns and which as exons -regulatory proteins control the intron-exon choice by binding to regulatory sequences within the primary transcript42
6143376414chromatin structure-binding histones more loosely or tightly to the nucleosome makes the DNA more or less accessible for transcription43
6143380515methylation of DNaadding methyl groups(CH4) to DNA silences the genes44
6143382976epigenetic inheritancereversible changes to the DNA that do not change the actual sequence45
6143385456regulation at transcription levelalternative slicing during RNA processing alters which segments are edited out of the final RNA transcript46
6143388499degradation of mRNAthe length of time that a specific molecule of mRNA remains in the cytoplasm varies and is controlled47
6143407951TATA box-critical to the process of transcription -area within the PROMOTER that mediates binding of transcription factors and RNA polymerase to DNA -directs RNA polymerase to the initiation site48
6143416769genetics of viruses-a virus is a parasite that can only live inside another cell; it commandeers the host cell's machinery to transcribe and translate all the proteins necessary to replicate new viruses49
6143421903viruses__________ are enclosed in a protein called a capsid or viral envelope50
6143424305capsida protein coat that cloaks the virus51
6143427374host rangethe range of organisms that a virus normally infects52
6143429677bacteriophage-phage virus -most complex and best studied virus -it attacks bacteria53
6143432410retroviruscontains RNA(not DNA) -produces new DNA, complementary DNA(c-DNA) using the enzyme reverse transcriptase54
6143434846transduction-leads to genetic recombination -process by which phage viruses acquire bits of foreign DNA as they infect different bacterial cells and transfer them to other cells as part of the infection process -two types of transduction: generalized and restricted55
6143442923generalized transductionmoves random pieces of DNA from one cell to another56
6143444402restricted transductiontransfers specific pieces of DNA during lysogenic cycle57
6143447164lytic cyclevirus infects and takes over a cell, replicates itself, causes the cell to burst, and releases a new generation of infectious viruses58
6143456013lysogenic cyclevirus infects cell but replicates without destroying the cell; it becomes a PROPHAGE, integrated into a specific site in the host's DNA; it can revert to the lytic cycle when triggered by some environmental factor59
6143493549plasmid-foreign, small, circular, self-replicating DNA molecule that inhabits bacteria and can express itself through the host bacterium -one bacterium can contain many ___________60
6143498170F plasmid-for fertility -contains genes fro production of a pilus, a cytoplasmic bridge connecting two cells that allows DNA to move from one cell to another(a primitive form of sexual reproduction called conjugation)61
6143503244R plasmid-confers resistance to an antibiotic on a host bacterium; can be transferred from one cell to another by conjugation62
6143506347operon-an important model for gene regulation -found in prokaryotes only -two types: inducible(Lac) and repressible(tryptophan)63
6143599692lac operonis "off" unless induced to turn on64
6143601079tryptophan operonis "on" unless turned off(repressed)65
6143608464promoterbinding site for RNA polymerase66
6143608465operatorbinding site for repressor67
6143609832repressorbinds to operator and prevents RNA polymerase from binding to promoter; is allosteric68
6143612458regulator geneproduces repressor69
6143612459induceran isomer of lactose, acts as allosteric effector for the repressor, causing the repressor to change its shape70
6143615377prions-infectious, misfolded proteins that cause severe brain diseases: -scrapie in sheep -mad cow disease in cattle -creutzfeldt-jakob disease in humans -prions spread disease by causing other proteins to misfold71
6143646185transposons-transposable genetic elements=jumping genes-move around the genome -discovered by Barbara McClintock in corn -two classes of transposons: insertion sequences and complex transposon72
6143660717insertion sequences-consists of only one gene that codes for transposase, the enzyme responsible for moving the gene; these can cause mutations if they land within a region of DNA that regulates gene expression73
6143667970complex transposonincludes the insertion sequence+ other genes74
6143670518human genome-consists of about 25,000 genes and 3 billion base pairs -97%=noncoding regions75
6143672464regulatory sequencescontrols gene expression76
6143673735intronsintervening sequences; are excised from the initial transcript during RNA processing77
6143677163tandem repeatsshort sequences of DNA that repeat over and over Ex: make up telomeres78
6143679029satellite DNAshort sequences of DNA that repeat as many79
6143684448alu sequencea DNA sequence about 300 base pairs long, 5% of human DNA80
6143685918telomeres-special nucleotide sequences found at the ends of eukaryotic DNA -consists of a short nucleotide sequence, TTAGGG, repeated 100-1000 times -protects organisms's genes from being eroded through repeated rounds of DNA replication -most body cells do not have_______ and the DNA of older cells is shorter than thatof younger cells81
6143694083telomeraseenzyme that catalyzes the lengthening of telomeres, is present in normal fetal and cancer cells82
6143696773p-53 gene-"guardian of the genome" -a transcription factor for several genes -turns on genes involved in DNA repair -If Dna damage is irreparable, p-53 activates suicide genes, which cause cell death-apoptosis83
6143702310genetic engineering-produces recombinant DNA -combines DNA from two sources into one molecule -used in biotechnology -gene cloning -tools used: restriction enzymes, gel electrophoresis, DNA probes, RFLPS, or cDNA84
6143718897gene therapyreplacing a nonfunctioning gene in a person's cells with a correctly function one85
6143721543uses for genetic engineering-gene therapy -produces human protein, such as insulin, for therapeutic use -prepare multiple copies of genes for study(cells usually have only one or two copies of a gene -bacteria have been engineered to digest oil in oil spills86
6143747846restriction enzymes-discovered in late 1960s in bacteria, where they are a defense against infection by viruses -basic tool of biotechnology; called molecular scissors -cut DNA at specific recognition sites87
6143779944recognition fragmentsresulting fragments of DNA from recognition sites88
6143796947gel electrophoresis-technique that separates molecules of DNA in an agarose gel in an electricc field -DNA is digested with restriction enzymes before being run in a gel -the smaller the molecule of DNA, the faster and farther it runs through the gel -DNA(which is negative) runs from the cathode(-) to the anode(+) -DNA in gel is stained and viewed under UV light -In order to do finer separation of similarly sized pieces of DNA, the concentration of the agarose gel can be increased -also used to separate proteins89
6143823251gene cloning method-isolate gene of interest -insert that gene into a PLASMID -insert the plasmid into a CLONING VECTOR, such as a bacterium; to accomplish this, the bacterium must be made competent -As the bacterium reproduces by fission, the gene is copied or cloned -identify the bacteria that contain the selected genes and harvest them -Human insulin and growth hormone are made for therapeutic use with this technique90
6143839450making a cell component-technique to enable a cell to uptake a plasmid -carried out by a series of drastic temperature changes(heat shock) in the presence of Ca2+ to disrupt the cell membrane91
6143844978DNA probe-radioactively labeled single strand of nucleic acid -used to tag a specific sequence in a DNA sample -DNA is denatured or melted(two strands are separated, and the probe binds to the complementary sequence wherever it occurs -used to identify a person who carries an inherited gene mutation, such as sickle cell anemia or huntington's disease92
6143879987complementary DNA-DNA made from RNA using reverse transcriptase -Carries a complete coding sequence with no introns -can be placed in a cloning vector for genetic engineering.93
6143883578RFLP-restriction fragment length polymorphisms -differences in noncoding regions of DNA that vary across the population -scattered throughout the genome -are genetic markers tha produce a DNA fingerprint -No two people(except identical twins) have the same RFLP pattern -inherited in simple Mendelian fashion94
6143889532PCR(polymerase chain reaction)-cell-free, autopmated technique by which a tiny piece of DNA can be rapidly copied(amplified) -Dna in saliva from licking a stamp can be amplified into billions of copies in a few hours -Requires Taq enzymes(Taq polymerase) -limitation of technique: some of the sequence of DNA to be amplified must be known in advance in order to make necessary primers95
6143897769Taq enzymes(Taq polymerase)-Taq=thermus aquaticus -enzyme that is extracted from extremophile bacteria that live in hot springs -heat stable at 100C -required for PCR technique96

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