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Bio 110 lecture notes - 2/26 (Gene Regulation) Flashcards

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680985304Recombinant DNA contains?DNA from more than one source.
680985305Restriction enzymes are useful because?You can mix and match DNA from different sources.
680985306Plasmidsmall, circular piece of DNA that is not the main chromosome
680985307Transformationputting DNA into bacteria
680985308What 4 things are needed for transformation to occur?PCR, restriction enzymes, recombinant DNA and plasmids.
680985309Restriction enzymes protein cuts DNA at aspecific sequence (called the restriction site)
680985310Sticky ends canbe stuck back together with hydrogen bonds
680985311Most sticky ends can be read the same from 5' to 3' - these are calledpalindromes
680985312In PCR which gene fragment travels the fasted and toward what electrical node do they move towardssmallest travels the fastest; toward the positive node because DNA has a negative charge
680985313Insertion or deletion have a better or worse effect than base substitution and why?worse because it can cause a frameshift (change in the reading frame)
680985314In general, what does regulation of gene expression control in a gene?Whether the gene is on/off and this determines whether gene is being transcribed and translated.
680985315What 3 reasons is it necessary for genes to be regulated?In order to develop and maintain different cell types, control cell division, and to respond to changes in the environment.
680985316The genes which are always on are called and these genes _______ to the environmentconstitutive genes; Do not repsond to the environment.
680985317The genes which can be turned on/off are calledinducible genes; these respond to the environment.
680985318What are the two types of gene regulation?negative and positive.
680985319When a repressor binding site is bound, what happens to the gene? What about when nothing is bound to it?The gene is turned off once bound; if nothing is bound it remains on.
680985320When a activator binding site is bound, what happens to the gene? What about when nothing is bound to it?The gene is turned on once bound; if nothing is bound it remains off.
680985321What is bacteria's preferred molecule to break down? What happens if this molecule is not readily available, what does the bacteria do for "food"?glucose; if glucose is not available then the bacterium will turn on the genes necessary to break down whatever sugar source is readily available.
680985322A coordinately regulated cluster of genes that share the same promoter is called theoperon.
680985323Name the 5 parts of the bacterial lac operon and which are regulated by the same promoter?P lac lac O lac Z lac Y lac A Lac ZYA - all regulated by same promoter.
680985324In the bacterial lac operon, what is the job of the P lac?promoter
680985325In the bacterial lac operon, what is the job of lac O?operator
680985326In the bacterial lac operon, what is the job of lac Z?β galactosidase enzyme
680985327In the bacterial lac operon, what is the job of lac Ypermease
680985328In the bacterial lac operon, what is the job of lac Atransacetylase
680985329What 2 jobs does the β galactosidase enzyme have? Which part of the bacterial lac operon is it produced from?splits the glucose molecule into glucose + galactose AND converts some lactose into allolactose; produced from lac Z.
680985330What is the job of permease? Which part of the bacterial lac operon is it produced from?permease is a transporter protein and it brings lactose into the cell; produced from lac Y.
680985331What is the job of transacetylase? Which part of the bacterial lac operon is it produced from?...
680985332Negative regulation is whena repressor binds to a gene and it is kept OFF unless needed.
680985333Repressor protein's are encoded by? What kind of gene is this? What object to they resemble?Lac I gene; constitutive (always on); (look like a pair of pants)
680985334What does the repressor protein do when lactose is present?When lactose is present it binds allolactose, this causes a change in shape and since only 1 of 2 binding sites on a repressor protein can be used at once it cannot bind to lac O. Thus, RNA polymerase is not happy.
680985335What does the repressor protein do when lactose is absent?It binds to lac O; thus, RNA polymerase is sad.
680985336Name 3 examples of eukaryotic gene expression.1. Transcription factor protons 2. Methylation 3. Histone tail acetylation
680985337Methylation, an example of eukaryotic gene expression, does what and what effect does this have?Adds -CH₃ to the "C" bases, which turns off transcription.
680985338Histone tail acetylation, an example of eukaryotic gene expression, does what and what effect does this have?Adds O=C-CH₃ to histone tail, which makes the DNA more losely packed so this often turns genes on because they're more readily available.
680985339Transcription factor protons, an example of eukaryotic gene expression has what effect?Transcription factor protons can bind DNA and influence transcription.

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