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Biochemistry Ch.2 Flashcards

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7255619639State the unusual properties of water and explain why these properties are observed (include the shape of the water molecule and ability to form hydrogen bonds)High melting + boiling point (b/c 4 H bonds between other water molecules -lots of energy to break H bonds) high heat of vaporization (same) Shape of water comes from two H atoms sharing electrons with one O atom (BENT). There is two bonds with H atoms and 2 with nonbonding orbitals making it nearly tetrahedron. This makes it polar creating attraction to bond to other water molecules. Hydrogen bonds occur because O is partially - while H's are partially +. This in turn causes the -O to hydrogen bond with the partial H+ from another water molecule, vice versa. This is an example of ELECTROSTATIC attraction0
7255619640define Amphipathiccompounds with regions that are polar and nonpolar1
7255620845define bond dissociation energyenergy required to break a bond, for H-bonds (23 kJ/mol)2
7255620846define clathratescrystalline compounds of nonpolar solutes and water. Ordering of water molecules reduces entropy. (causes water to become highly ordered.)3
7255621914define colligative propertiessolutes change certain physical properties of a solvent, water: vapor pressure, boiling point, melting point (freezing point), and osmotic pressure.4
7255621915define hydrogen bondWeak electrostatic attraction between one electronegative atom (N, O, F) and a hydrogen atom covalently linking to a second electronegative atom EX: interaction between the oxygen atom of one water molecule and the adjacent water molecule's hydrogen, due to electrostatic interactions.5
7255622828define hydrophiliccompounds that dissolve easily in water because they are "water-loving"6
7255622829define hydrophobiccompounds that do not dissolve easily in water because they are "water-fearing"7
7255623650define hydrophobic interactionsforces that hold the nonpolar regions of molecules together. Strength is not due to any nonpolar parts, rather from a system of thermodynamic stability by minimizing the number of ordered water molecules required to surround hydrophobic portions of the solute molecules.8
7255623651define hypertonic (solution)osmolarity is higher than that of the cytosol of a cell, cell shrinks as water moves out.9
7255623652define hypotonic (solution)osmolarity is lower than that of the cytosol of a cell, cell swells as water moves in.10
7255624675define isotonic (solution)solution's osmolarity is equal to that of the cell's cytosol11
7255624676define micellesAn aggregate of amphipathic molecules in water, with the nonpolar potions in the interior and the polar potions at the exterior surface, expose to water.12
7255626583define osmolarityConcentration of solution in terms of solutes per liter of solution.13
7255626584define osmosiswater movement through a semipermeable membrane driven by differences in osmotic pressure, important in life of most cells14
7255628995define van der waals interactionstwo dipoles (different molecules) weakly attracted to each other (polarization), bringing two nuclei closer15
7255631195Draw a diagram of the structure of ice and discuss the characteristics of the hydrogen bonding observed in ice and why ice is less dense than liquid waterFigure 2.2 solid water (ice) can form a maximum of four H-bonds, creating regular crystalline lattice which makes the ice less dense than water. (spaced evenly between). Water only has an average of 3.4 H-bonds and is spaced out more.16
7255632766Describe the interactions involved when polar and ionic solutes dissolve in waterPolar molecules dissolve in water because the partial negative part of the polar molecule attracts the partial positive hydrogen atom in water. Thus there is a change from solute-solute H-bond interaction. (polar biomolecules dissolve readily in water because they can replace water-water interactions with more energetically favorable water-solute interactions) Ionic molecules like salts can be hydrated and stabilized by water. For example, NaCl becomes Na+ and Cl- ions which attract water molecules (fig2-6) ion-dipole interaction17
7255635255Compare the types of weak interactions among biomolecules in strength to each other and to covalent bondsHydrogen Bonds -between neutral groups and peptide bonds (Carboxyl +amino) Ionic interactions -attraction and repulsion Hydrophobic interactions Van der Waals Interaction All of these interactions have a cumulative effect, thus playing important roles in macromolecular structures.18
7255636374Describe the ionization of water and the extent to which it occursSmall degree of ionization of water to hydrogen ions (H+) and hydroxide ions (OH-) Water molecules have a tendency to undergo reversible H20 (reversible arrows) (H+) + (OH-) Hydrogen ions are quickly hydrated to Hydronium ions (H30+)19
7255637671Define Kw and know how it is determined; know its value at 25 degrees Cequilibrium constant of water at 25 degrees C The product (55.5M)(Keq) at 25 degrees C = (ion product of water) Kw = [H+][OH-] = (55.5M)(1.8x10^-16M) = 1.0x10^-14M^2 This is the neutral pH where there are exactly equal concentrations of H+ and OH-20
7255639270Calculate pH or pOH at 25 degrees C given the [H+] or [OH-] of a solutionpH = -log[H+] pOH = -log[OH-] pH scale Table 2-621
7255645585Calculate pH (or [H+]), pKa (or Ka), or the concentration of a weak acid, given information on two of the three variablesKa is the ionization constants or acid dissociation constants Ka = [H+][A-] / [HA] = Keq pKa = -log Ka Henderson-Hasselbach Equation: pH = pKa + log (base/acid)22
7255647772Calculate the pH of a buffer or the proportions of conjugate acid and base present in a bugger using the Henderson-Hasselbach equationHenderson-Hasselbach Equation: pH = pKa + log (base/acid)23
7255650063Discuss how to choose and prepare an effective buffer for a given applicationA weak acid and its conjugate base, use the acid that corresponds to the desired equivalence zone from a titration24
7255650771Calculate the change in pH of a buffer when acid or base is addedpg. 66 (2-6)25
7255654773Identify the three reversible equilibria involved in the bicarbonate buffer system in animals with lungs and explain how changes in pH affect these equilibriaH2CO3 = Carbonic Acid (proton donor) HCO3- = Bicarbonate (proton acceptor) C02 (d) = dissolved carbon dioxide LOOK AT "NOTES"26
7255656551Explain what is meant by acidosis and how untreated diabetes leads to acidosisAcidosis occurs when the pH of blood is often below the normal value of 7.4 Lack of insulin or the insensitivity to insulin disrupts the uptake of glucose from blood into the tissues and forces the tissues to use stored fatty acid as their primary fuel. This leads to the accumulation of 2 carb acids, beta-hydroxybutyric acid and acetoacetic acid. The dissociation of these acids lead to acidosis.27
7256815519Define condensation reactionWhere elements of water are eliminated after a reaction occurs. (H20 is cleaved from reactants)28
7256815520Define hydrolasesexergonic reaction (release) that uses a catalytic enzyme for hydrolysis29
7256815907Define hydrolysis reactionCleavage accompanied by the addition of elements of water.30

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