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Biochemistry Flashcards

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10960077176Which amino acid does not have a chiral a-carbon atom?Glycine (Gly, G)0
10960079693Which amino acids have 2 chiral carbons? (4 possible stereoisomers each)Threonine and isoleucine1
10960080615The 20 L-a-amino acids are frequently grouped according to what?Chemical nature of their side chains2
10960090976Which 4 amino acids have saturated side chains?Alanine (Ala, A) Valine (Val, V) Leucine (Leu, L) Isoleucine (Ile, I)3
10960082435Aliphatic amino acidsNon-polar and hydrophobic amino acids that prefer the interior of protein molecule4
10960096764Examples of aliphatic amino acidsValine, Leucine and Isoleucine Glycine has the smallest functional group (hydrogen) of any of the a-amino acids. Glycine has such a small side chain that it does not have much effect on the hydrophobic interactions.5
10960108206Cyclic amino acidThe heterocyclic pyrrolidine ((CH2)4NH) ring restricts the geometry of polypeptides.6
10960112966Example of cyclic amino acidProline (Pro, P) - has 3 carbon side chain bonded to the a-amino nitrogen7
10960129904Aromatic R groupsA cyclic, planar molecule with a ring of resonance bonds that exhibits more stability than other geometric or connective arrangements with the same set of atoms. Very stable, and do not break apart easily to react with other substances. Organic compounds that are not aromatic are classified as aliphatic compounds—they might be cyclic, but only aromatic rings have special stability (low reactivity). Can absorb UV8
10960132794Examples of side chains with aromatic groupsPhenylalanine (Phe, F) - Benzene Tyrosine (Try, Y) - phenol ring Tryptophan (Trp, W) - bicyclic indole group9
10960140413What are the most hydrophobic amino acids?Phenylalanine (Phe, F) , Valine, Leucine, and Isoleucine10
10960151508Although, Tryosine (Try, Y) and Tryptophan (Trp, W) have some hydrophobic character, they are...tempered by the polar groups in their side chains11
10960165626Which aromatic amino acids exhibit strong absorption of light in the near ultra-violet region of the spectrum?Tryosine, Phenylalanine and Tryptophan12
10960173258Application of UV absorption by aromatic amino acidsUsed for the analytical detection of proteins13
10960179131Sulfur-containing R groupDisulfide bridges may stabilise the three-D structures of proteins14
10960183432Examples of Sulfur containing R group amino acidsMethionine (Met, M) (CH2CH2SCH3) Cysteine (Cys, C) (CH2SH)15
10960194504Formation of cystineOxidation: Two cysteine side chains can be crossed-linked forming a disulfide bridge (-CH2-S-S-CH2-) May undergo reduction to reform two cysteine amino acids16
10960204382Side Chains with Alcohol GroupSite of phosphorylation of many proteins17
10960233782Examples of side chains with alcohol groupSerine (Ser, S) Threonine (Thr, T) Tyrosine (Tyr, Y) ...have uncharged polar side chains18
10960237474Basic R groupsSide chains are nitrogenous bases which substantially positively charged at pH7 (except His) - Strongly polar so found on the exterior surfaces of proteins, where they can be hydrated by the surrounding aqueous environment. Their pKa's are high enough that they tend to bind protons, gaining a positive charge in the process.19
10960241086Examples of basic R groups amino acidsHistidine (His, H) - imidazole (least basic) Lysine (Lys, K) - alkylamino group Arginine (Arg, R) - guanidino group Their side chains contain nitrogen and resemble ammonia, which is a base.20
10960280746Amide amino acids (amide, derivative of Aspartic acid and Glutamic acid)Asparagine and Glutamine Highly polar but not charged Amides are usually regarded as derivatives of carboxylic acids in which the hydroxyl group has been replaced by an amine or ammonia.21
10960302822Acidic R groupsAspartate (Asd, D) Glutamate (Glu, E) Dicarboxylic acids, and are negatively charged at pH7 (loses a proton)22
10960323418What are the ionizable groups in amino acids?1.) a-carboxyl 2.) a-amino 3. Some side chains23
10960328153pH properties of ionizable groups in amino acidsEach ionizable group has a specific pKa AH <-> A- + H+ For a solution pH BELOW the pKa, the protonated form predominates (AH) For a solution pH ABOVE the pKa, the unprotonated form predominates (A)24
10960369555Application of titration curveTitration curves are used to determine pKa values25
10960374779ZwitterionA molecule with equal numbers of positive and negative charges - thus the net charge is zero. Under normal cellular conditions, amino acids are zwitterions (dipolar ions): Amino group = -NH3+ Carboxyl group = -COO-26

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