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Chapter 14 Biology Raven Flashcards

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2734760671Bacteriophages (phages)viruses that affect bacteria0
2734765974Lyse (lytic phage)cell burst1
2734765975DNA structure1. A five carbon sugar (deoxyribose in DNA and ribose in RNA) 2. A phosphate group (PO4) 3. A nitrogenous base (either purine or pyrimidine)2
2734765976PurineAdenine (A) or Guanine (G) 2 ringed structure3
2734765977PyrimidineThymine (T) or Cytosine (C) or Uracil (U) Single ringed structure4
2734769114Chargoff's ruleA=T G=C5
2734770041Dehydration synthesisThe 5' phosphate and 3' hydroxyl groups allow DNA and RNA strands to form long chains of nucleotides6
2734772082Phosphodiester bondsthe phosphate group is now linked to the 2 sugars by a pair of ester bonds7
2734781056TautomersKeto (C=O) versus enol (C-OH) groups and amino (_NH2) versus imino (=NH) groups that are attached to the bases8
2734781057Phosphodiester backbonerepeating sugar and phosphate units joined by phophodiester bonds9
2734781058Base pairtwo strands held together by formation of hydrogen bonds and between bases on opposite strands. Adenine can form two hydrogen bonds withthymine to form a A-T base pair Guanine can form three hydrogen bonds with cytosine to form a G_C base pair10
2735970431Antiparallelone strand running 5'to3' and the other running 3'to5'11
2735970432Three possible models of DNAconservative model semiconservative model dispersive model12
2735970433Semiconservative modelproduces 2 hybrid molecules of old and new strands13
2735972890DNA replicationopening up one DNA helix and making copies of both strands to produce two daughter helices, each consisting of one old strand and one new strand14
2735980828DNA polymeraseadd new bases to the 3' end of existing strands and requires a primer to begin synthesis. Refers to a group of enzymes responsible for the building of a new DNA strand from the template.15
2735980829RNA polymerasesynthesis their primers16
2736197625DNA Pol 1, 2, 3all three enzymes synthesize polynucleotide strands only in the 5'-3' direction and require a primer17
2736202360Nuclease activityability to break phosphodiester bonds between nucleotides (endonucleases and exonucleases)18
2736202361EndonucleasesCut DNA internally19
2736203373ExonucleasesChew away at an end of DNA20
2736220479DNA Polymerase 1Acts on lagging strand to remove primers and replace them with DNA21
2736220480DNA Polymerase 2DNA repair process22
2736220481DNA Polymerase 3Main replication enzyme. Synthesize okazaki fragments23
2736340342HelicasesEnzymes that use energy from ATP to unwind the DNA template24
2736340343Single-strand-binding protein (SSB)Coats the exposed hydrophobic base of the single strand25
2736340344SupercoilingThe coiling in space of double-stranded DNA molecules due to torsional strain, occurs when the helix is unwound26
2736340345TopoisomeraseEnzymes that can alter the topological state of DNA27
2736340346DNA gyraseThe topoisomerase involved in DNA replication. Enzyme that relieves strain while helicase has unwound the strands28
2736340347SemidiscontinuousOne strand can be synthesized in a continuous fashion from an initial primer, while the other strand must be synthesized in a discontinuous fashion with multiple priming events and short sections of DNA being assembled29
2736340348Leading strandContinuous30
2736340349Lagging strandDiscontinuous31
2736340350Okazaki fragmentsFragments synthesized on lagging strand32
2736340351Replication forkPartial opening of DNA helix to form 2 single strands33
2736340352Leading strand synthesisA single priming event is required then the strand can extend indefinitely by the action of DNA Pol 334
2736340353ProcessivityThe ability of a polymerase to remain attached to the template35
2736340354Sliding clampBeta subunit in Pol 3 made up of 2 identical protein chains that form a circle around the strand36
2736340355Lagging strand synthesisPrimase is needed to synthesize primers for each okazaki fragment and then all these RNA primers need to be replaced with DNA. The fragments are stitched together.37
2736361649DNA ligaseSeals the gap, joining okazaki fragments into complete strands38
2736361650TerminationLast stage of replication produces two daughter molecules that are intertwined then unlinked by gyrase39
2736361651ReplisomeForms a macromolecular assembly Primosome and complex of 2 DNA Pol 3 enzymes40
2736361652PrimosomeComposed of primate and helicase41
2736361653Eukaryotic replicationHas multiple origins of replication for each chromosome, resulting in multiple replicones42
2736374826Proliferating Cell Nuclear Antigen (PCNA)Sliding clamp unit on eukaryotes43
2736374827TelomeresStructure found on the end on eukaryotic chromosomes. They protect the ends from nucleases and maintain integrity of linear chromosome.44
2736374828Replicating endsLagging strands last primer is removed, it cannot be replaced. During the next round of replication the next chromosome will be shorter. Resulting in aging.45
2736374829TelomeraseContains an internal RNA that the enzyme uses as a template to extend the DNA of the chromosome end. Cancer cells generally show activation of telomerase which allows them their length so they don't shorten.46
2736374830MutagenAgent that increases number of mutations (UV light, xrays, radiation)47
2736374831Specific repair systemsTarget a single kind of lesion in DNA and only repair that lesion.48
2736374832Nonspecific repair systemsUse a single mechanisms to repair multiple kinds of lesions49
2736381728Photorepair(Specific repair) specific for UV light damage (tymine dimer). Photolase absorbs light in the visible range and uses this energy to cleave the tymine dimer.50
2736381729Excision repair(Nonspecific) recognizes damage, removes damaged region, resynthesizes using the info on the undamaged strand as a template51
2736381730UvrABC complexBinds to damaged DNA and then cleaves a single strand on either side of the damage, removing it. DNA Pol 1 or 2 replaces damaged DNA52

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