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Chapter 15 Biology Raven Flashcards

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2734029546Nutritional mutationsOnly grow if the medium is supplemented with additional nutrients0
2734029547One gene/one polypeptide hypothesisGenes specify the structure of enzymes and that each gene encodes the structure of one enzyme. This hypothesis states the molecular relationship between genotype and phenotype1
2734029548Francis CrickCentral dogma of molecular biology2
2734029549Central DogmaDNA ➡RNA ➡ protein3
2734029550TranscriptionDNA ➡ RNA Produces exact copy of DNA The DNA-directed synthesis of RNA by the enzyme RNA polymerase. This uses the principle of complementary to use DNA as a template for RNA.4
2734029551TranslationRNA➡protein.5
2734029552Reverse translationClass of viruses called retro viruses converts RNA genome into DNA copy using the viral enzyme reverse transcriptase6
2736425409RetrovirusesConverts RNA genome into DNA copy using the viral enzyme reverse transcriptase.7
2736425410Template strandThe only one of the two DNA strands needed to be copied for RNA. Also called anti-sense strand.8
2736425411Coding strandThe strand of DNA not used as a template. Also called sense strand. Coding strand after transcription has the same sequence except tymine is now uracil.9
2736425412mRNAMessenger RNA. The RNA transcript used to direct synthesis of polypeptides. Carried the DNA message to the ribosome for processing.10
2736425413tRNATransfer RNA. Adapter molecule that can interact with both RNA and amino acids. Have amino acids covalently attached to one end and an anticodon that can base pair with an mRNA codon at the other. It acts to interpret info in mRNA and to help position the amino acid on the ribosome11
2736425414snRNASmall nuclear RNA are part of the machinery involved in nuclear processing of eukaryotic "pre-mRNA"12
2736425415SRP RNAContains both RNA and proteins. Mediates the process of protein synthesis by ribosome on the rough ER13
2736425416Small RNAsIncludes micro RNA (miRNA) and small interfering RNA (siRNA) are involved in the control of gene expression14
2736425417CodonsThe genetic code consisted of a series of blocks of info made of 3 nucleotides. Each corresponding to an amino acid in the encoded protein.15
2736425418Different combinations of nucleotides6416
2736425419Reading frameEstablished by the first codon in the sequence determines how all subsequent codons are read17
2736425420Frameshift mutationsAlter the reading frame of the genetic message by deleting or adding nucleotides18
2736425421Francis Crick and Sydney BrennerFound codons and frameshift mutation.19
2736425422Triplet binding assayIdentified 54 triplets20
2736425423Stop codonsUAA, UGA, UAG21
2736425424Start codonAUG. Encodes the amino acid Methionine (Met)22
2736425425DegenerateSome amino acids are specified by more than one codon23
2736425426RNA polymerase in prokaryotesExist in 2 forms: core polymerase and holoenzyme24
2736425427Core polymeraseSynthesize RNA using a DNA template , but it cannot initiate synthesis accurately. 4 subunits: 2 identical alpha, beta, and beta to the first degree.25
2736425428HoloenzymeCan accurately initiate synthesis. One sigma attached to core polymerase 4 subunits.26
2736425429Two sites of initiation1. The promoter that forms a recognition and binding site for the RNA polymerase 2. The actual start site27
2736425430TerminatorSignal to end transcription28
2736425431Transcription unitThe region from promoter to terminator. Downstream and upstream29
2736425432Downstream3' to 5' template strand (+1)30
2736425433Upstream5'to 3' coding strand (-1)31
2736425434PromoterIs found upstream of the start site and is therefore not transcribed byb the polymerase32
2737503853Clearance (escape)the process of the sigma leaving the promoter.33
2737504227Sigma subunitBinds to the promoter is the first step of transcription. As the RNA polymerase molecule leaves the promoter region, the sigma factor is no longer required.34
2737505620Transcription bubbleThe region containing the RNA polymerase, the DNA template, and the growing RNA transcrpt35
2737510101HairpinThe self-complementary G-C region forms a double stranded stem with a single stranded loop36
2737512214CoupledIn prokaryotes, the mRNA produced by transcription begins to be translated before transcription is finished37
2737513296OperonFound in prokaryotes,. A single transcription unit that encodes multiple enzymes necessary for a biological pathway.By clustering genes by function, they can be regulated together.38
2737533648RNA Polymerase 1Transcribes rRNA. Their promoters are specific for each species39
2737534155RNA Polymerase 2Transcribes mRNA and some small nuclear RNA complex promoters. "core promoters" can be composed of a number of different elements including the TATA box.40
2737535425RNA Polymerase 3Transcribes tRNA and some other small RNA. Most promoters were found to actually be internal to the gene itself.41
2737537090Initiation complexEukaryotic transcription requires the binding of the transcription factors to the promoter before RNA Pol 2 binds to DNA. Prokaryotic translation includes an initiator tRNA molecule charged with a chemically modified methionine, N-formylmethionine (tRNA^fMet)42
2737539039Primary transcriptRNA synthesized by RNA Pol 2 which is processed to produce the mature mRNA.43
2737540859Methyl-GTP Capadded to the 5' end of the mRNA after transcription44
2737541483Poly-A tailadded to the 3' end of the mRNA after transcription45
2737542471pre-mRNA splicingEukaryotic genes may contain noncoding sequences that have to be removed to produce the final mRNA. This is accomplished by the organelle spliceosome. Occurs in nucleus prior to export of the mRNA to the cytoplasm.46
2737543976Introns(Intruder) noncoding DNA that interrupts the sequence of the gene47
2737544656Exonsexpressed coding sequence48
2737546873Spliceosomecluster of small nuclear ribonucleoprotein particles (snRNPs) which splices (removes) the introns.49
2737548130Branch pointA conserved A nucleotide within the 2 base sequnce of the introns50
2737551630pre-mRNA splicing stepssnRNA forms base pairs with 5' end of intron, and at branch site. snRNPs associate with other factors to form spliceosome 5' ends of intron is removed and forms bond at branch site, forming a lariate. The 3' end of the intron is then cut off. Exons are joined, spliceosome disassembles51
2737554586Alternative splicingA single primary transcript can be spliced into different mRNAs by the inclusion of different sets of exons52
2737556808Ribosomethe key organelle in translation, but it requires mRNA, tRNA, and a host of other factors. They can only ensure that the codon-anticodon pairing is correct.53
2737557981Amnioacyl-tRNA synthesisEnzymes that attaches amino acid to tRNA with the correct anticodon for protein synthesis to proceed54
2737559800tRNA structurecloverleaf type of structure based on intramolecular base pairing that produces double stranded regions. This structure is then folded in space to form an L-shape molecule that has 2 functional ends: the acceptor step and and anticodon loop.55
2737562304Acceptor stem3' end of the molecule where the amino acid attaches56
2737563169Anticodon loopThe bottom loop of the cloverleaf and it can base pair with the codons in mRNA57
2737565456tRNA charging reactionThe reaction catalyzed by the enzyme in aminoacyl-tRNA synthesis that requires ATP. Joins the acceptor stem to the carboxyl terminus of an amino acid58
2737565770Charged tRNAan amino acid joined to a tRNA59
2737569895Peptide bondformed between the amino group of one amino acid and the carboxyl group of another amino acid60
2737571841tRNA binding sitesE, P, A Incoming charged tRNAs enter the ribosome at the A site, transit through the P site, and ten leave through the E site.61
2737572125P site(peptidyl) binds to the tRNA attached to the growing peptide chain62
2737572727A site(amnioacyl) binds to the tRNA carrying the next amino acid to be added63
2737573216E site(exit) binds to the tRNA that carried the previous amino acid added64
2737624796Peptidyl transferaseresides in the large subunit of the ribosome and is an enzyme that forms the amino acids together into a peptide bond.65
2737637319Prokaryotic initiator tRNAtRNA^fMet N-formylmethionine66
2737649253Peptide bond formationformed between a new charged tRNA in the site A and the growing chain in site P. The bond forms between the amino group pf the new amino acid (site A) an the carboxyl group of the growing chain (site P). This breaks the bond of the growing chain and its tRNA, transferring it the the A site67
2737653485Eukaryotic initiation differences1. The initiating amino acid is methionine, not N-formylmethionine. 2. less complicated initiation complex. mRNA lacks RBS (ribosomal binding sequence)68
2737655784Ribosomal binding sequence (RBS)When the tRNA^fMet is positioned over the first AUG codon of the mRNA, the large ribosomal subunit binds, forming the E, P, and A sites69
2737659681Elongation factorThe second tRNA binds to EF-TU and GTP to bind to mRNA in the A site. GTP is hydrolyzed and EF-TU and GDP dissociate with the ribosome. Peptide bond formation happens. The tRNA with the growing chain moves to the P site. The uncharged tRNA formerly in the P site is now in the E site and will be ejected.70
2737672800Wobble pairingtRNAs wobble on the mRNA, so that a single tRNA can read more thanone codon on the mRNA71
2737673345Terminationstop codon is reached.72
2737676118Release factorsproteins that release the newly made polypeptide from the ribosome73
2737677252Signal sequenceA polypeptide that starts with a short series of amino acids that binds to the signal recognition particle (SRP)74
2737679664Signal recognition particle (SRP)Cytoplasmic complex of proteins75
2737679665Dockingthe binding of the ER receptor to the signal sequence ? SRP complex holds the ribosome engaged in translation of the protien on the ER membrane76
2737762170Mutationchanging a single base can result in an amino acid substitution that can lead to a debilitating clinical phenotype77
2737763946Point mutationmutation that alters single base78
2737764232Base substitution mutationsubstituting one base pair for another in DNA79
2737765035Mutation is silentif the substituted base pair encodes the proper amino acid80
2737766517Missense mutationwhen a base substitution changes an amino acid in a protein81
2737766808Transitiondoes not change the type of bases, it either subs a pyrimidine with a pyrimidine or a purine with a purine82
2737767606Transversiondoes change the type of bases in a base pair, pyrimidine with a purine or reverse83
2737768052Nonsense mutationwhen a base is changed to a codon that stops. Resulting in premature termination of translation and leads to a truncated protein84
2737770255Frameshift mutationAlter (addition/deletion) the reading frame in the mRNA downstream of the mutation85
2737771735Huntington diseasetriple sequence of DNA that is repeated86
2737772314Chromosomal mutationsaltered structure87
2737772726Deletionloss of a portion of a chromosome88
2737772998Duplicationof chromosome may or may not lead to phenotypic consequences89
2737773847Tandem duplicationduplication occurs next to original region90
2737774316Inversionresults when a segment of a chromosome is broken into two places, reversed, and put together91
2737775006Translocationa piece of one chromosome is broken off and joined to another. it can also move genes from one location to another92

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