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Chapter 16 AP Bio Flashcards

Control of Gene Expression

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318832416positive controlincreases the frequency of initiation
318832417negative controldecreases the frequency of initiation
318832418repressorsproteins that mediate negative control that bind to operators
318832419operatorsregulatory sites on DNA
318832420activatorsregulatory, alosteric proteins that mediate positive control
318832421lac operonconsists of a promoter, an operator and 3 genes that encode protein required for the metabolism of lactose
318832422trp operonencodes the enzymes necessary to synthesize tryptophan
318832423inductionwhen enzymes for a certain pathway are produced in response to a substrate
318832424repressionwhen bacteria capable of making biosynthetic enzymes don't produce them
318832425catabolic pathwaysbreakdown molecules
318832426anabolic pathwaysbuild up molecules
318965664regulatory proteinsmodulate the ability of RNA polymerase to bind to the promoter
318965665homeostasismetabolic equilibrium actively maintained by several complex biological mechanisms that operate via the autonomic nervous system to offset disrupting changes
318965666apoptosisprogrammed cell death
318965667major grooveLarger groove that spirals around the DNA double helix. Provides a location where a protein can bind to a particular sequence of bases and affect the expression of a gene.
318965668DNA-binding motifsa region found in a regulatory protein that is capable of binding to a specific base sequence in DNA
318965669helix turn helixdna binding motif which has two alpha helices connected by a turn
318965670recognition helixrecognizes and makes contact with a base sequence along the major groove of DNA Hydrogen bonding between an α-helix and nucleotide bases is one way a transcription factor can bind to DNA
318965671homeodomain motifa special class of helix turn helix motifs found in regulatory proteins that control development in eukaryotes
318965672homeodomain60 amino acid protein, binds to DNA and regulates expression
318965673zinc finger motifA type of DNA-binding motif in regulatory proteins that incorporates zinc atoms in its structure.
318965674leucine zipper motifA motif in regulatory proteins in which two different protein subunits associate to form a single DNA-binding site; the proteins are connected by an association between hydrophobic regions containing leucines (the "zipper").
318965675derepressedwhen tryptophan levels fall and the repressor alone cannot bind to the operator, allowing expression of the operon
318965676general transcription factorsany of a group of transcription factors necessary for the formation of an initiation complex by RNA polymerase II at a promoter. This allows a basal level that can be increased by the action of specific factors
318965677specific transcription factorsany of a great number of transcription factors that act in a time- or tissue-dependent manner to increase DNA transcription above the basal level
318965678enhancersa site of regulatory protein binding on the DNA molecule distant from the promoter and start site for a gene's transcription
318965679coactivators and mediatorslink transcription factors to RNA polymerase II
318965680transcription complexthe whole complex of transcription factors and RNA polymerase II bound to the promoter
318965681transcription activatorssome of theses alter chormatin structure
318965682histoneprotein molecule around which DNA is tightly coiled in chromatin
318965683chromatin-remodeling complexesuse energy from ATP to alter chromatin structure
318965684mRNAmust be transported out of the nucleus for translation
318965685translation repressor proteinsshut down translation by binding to the beginning of the transcript so that it cannot attach to the ribosome
318965686proteasesenzymes that degrade proteins by breaking peptide bonds, converting a protein into its constituent amino acids
318965687ubiquitinSmall protein that is linked to other proteins as a way of marking the targeted protein for degradation by proteasomes.
318965688proteasomea cellular organelle that degrades proteins marked with ubiquitin

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