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Organic Chemistry Flashcards

Vocabulary taken from Organic Chemistry (2006) by Joseph M. Hornback
Required reading for Organic Chemistry: Structure and Reactivity at NCF by Professor Scudder

Terms : Hide Images
1588699778Absolute configurationThe actual three-demensional arrangement of groups around a chirality center.0
1588699779AcetalThe product of the addition of two equivalents of an alcohol to an aldehyde or a ketone.1
1588699780Acetylide anionA carbon nucleophile generated by treating 1-alkynes with a very strong base, such as sodium amide.2
1588699781Achiral moleculeA molecule that is superimposable on its mirror image.3
1588699782Acidity constantAn equilibirum constant for the reaction of an acid with water as a base; used as a measure of the strength of an acid. For a general acid, HA, the equation for Ka is Ka = [A-][H3O+]/[HA].4
1588699783Activation energyThe energy required to surmount the energy barrier separating reactants and products.5
1588699784Acyl groupA carbonyl group with an attached alkyl group.6
1588699785Addition polymer or chain-growth polymerA polymer formed by a chain mechanism, where one initiatior molecule causes a large number of monomers to react to form one polymer molecule.7
1588699786Addition reactionA reaction that results in the addition of two groups to opposite ends of a multiple bond.8
1588699787AlkaloidA nitrogen-containing natural product that occurs primarily in higher plants and in some fungi, such as mushrooms.9
1588699788Alkyl groupThe part of a compound that has carbons that are only singly bonded to other carbons and hydrogens.10
1588699789Alkylation reactionA reaction that results in the attachment of an alkyl group to the reactant.11
1588699790Allowed reactionA pericyclic reaction that is energetically favorable because the electrons in the occupied M.O.'s do not increase in energy.12
1588699791Allyl groupThe CH2=CHCH2- group.13
1588699792Alpha carbonThe carbon adjacent to a functional group; most commonly used to refer to the carbon adjacent to a carbonyl group.14
1588699793Amorphous solidA solid in which the individual molecules have a random arrangement; a glassy solid with no order in the arrangement of its molecules.15
1588699794Amphoteric compoundA compound that can act as either an acid or a base.16
1588699795Angle strainDestabilization, usually found in compounds having three- or four-membered rings, that occurs when the orbitals of a bond do not point directly at each other, so the amount of overlap is decreased.17
1588699796AnnuleneA name sometimes given to rings that contain alternating single and double bonds in a Lewis structure.18
1588699797AnomersDiastereomers that are formed by cyclization of a carbohydrate with differing configurations at the new stereocenter.19
1588699798Anti additionThe addition of groups to opposite sides of a double bond.20
1588699799Anti conformationConformation in which the dihedral angle between two groups on adjacent atoms is 180 degrees21
1588699800Anti eliminationElimination of groups from a conformation in which the dihedral angle between them is 180 degrees. This is the preferred geometry for the E2 reaction.22
1588699801Antiaromatic compoundA compound that is destabilized because of the presence of a conjugated cycle of p orbitals containing 4n electrons.23
1588699802Antibonding M.O.A M.O. that is higher in energy than the A.O.'s that combine to form it.24
1588699803Anti-periplanar bondsBonds with a dihedral angle of 180 degrees.25
1588699804Aprotic soventA solvent that does not have a H bonded to N or O and therefore cannot H bond.26
1588699805Arenium ionThe carbocation formed by addition of an electrophile to a benzene derivative.27
1588699806Aromatic compoundA compound that is especially stable because of the presence of a conjugated cycle of p orbitals containing 4n + 2 electrons.28
1588699807Atactic polymerA polymer with random configurations at its many stereocenters.29
1588699808Atomic orbitalThe region about the nucleus of an atom where, if the orbital contains an electron, the probability of finding an electron is very high.30
1588699809Axial bondIn the chair formation of cyclohexane, a bond that is parallel to the axis of the ring.31
1588699810Axial strain energyThe amount of destabilization caused by a group in the axial position in the chair conformation of cyclohexane.32
1588699811Base ionThe most abundant ion in the mass spectrum.33
1588699812Benzyl groupThe PhCH2- group.34
1588699813BenzyneA highly reactive intermediate that has a benzene ring with a formal triple bond.35
1588699814Boat conformationThe boat-shaped conformation of cyclohexane that has no angle strain but does have some steric strain and some torsional strain.36
1588699815Bond disconnectionsThe imaginary process of breaking bonds at or near the functional groups in a compound during the process of retrosynthetic analysis.37
1588699816Bond dissociation energyThe amount of energy that must be added in the gas phase to break the bond in a homolytic manner.38
1588699817Bonding M.O.A M.O. that is lower in energy than the A.O.'s that combine to form it.39
1588699818Bromonium ionA three-membered ring containging a positively charged bromine atom; an intermediate formed in the addition of bromine to an alkene.40
1588699819Bonsted-Lowry acidA proton donor.41
1588699820Bronsted-Lowry baseA proton acceptor.42
1588699821Cahn-Ingold-Prelog sequence rulesRules that are used to assign priorities to groups attacted to a stereocenter so that the configuration of a compound can be designated.43
1588699822CarbanionA C with three bonds, an unshared pair of electrons, and a negative charge.44
1588699823CarbeneA reactive species having a C with only two bonds and an unshared pair of electrons.45
1588699824CarbenoidAn organometallic species that reacts like carbene.46
1588699825CarbocationA carbon with three bonds and a positive charge.47
1588699826CarbohydrateNaturally occuring compounds, often with the empirical formula C(H2O) that are polyhydroxy aldehydes or ketones and derivatives formed from these; includes sugars and starches.48
1588699827Carbonyl groupA C=O bond.49
1588699828Carboxy groupA carbonyl group with an attached hydroxy group.50
1588699829Chain reactionA reaction in which a reactive intermediate, such as a radical, reacts with a normal molecule, ultimately generating a molecule of product and regenerating the original reactive intermediate, which then causes another reaction cycle to occur. A chain reaction involves three steps: inititation, propagation, and termination.51
1588699830Chain-growth polymer or addition polymerA polymer formed by a chain mechanism, where one initiator molecule causes a large number of monomers to react to form one polymer molecule.52
1588699831Chair conformationThe chair-shaped conformation of cyclohexane that has no angle strain and has no torsional strain because it is perfectly staggered about all the C-C bonds. It is strain free.53
1588699832Chemical shiftThe position of an absorption on the x-axis in an NMR spectrum; provides information about the local environment of the atom that is responsible for the absorption.54
1588699833Chirality centerA carbon or other tetrahedral atom bonded to four different groups; a type of sterocenter.55
1588699834Chiral moleculeA molecule that is not superimposable on its mirror image.56
1588699835ChromophoreThe part of a molecule that is responsible for the absorption of ultraviolet or visible light.57
1588699836Cis-trans isomersStereoisomers that differ in the placement of groups on one side or the other of a double bond.58
1588699837CodonA series of three bases in a nucleic acid polymer that specifies a particular amino acid.59
1588699838Concerted reactionA reaction that occurs in one step.60
1588699839Condensation polymer or step growth polymerA polymer formed from monomers with two reactive functional groups by normal reactions, such as ester formation, between the functional groups.61
1588699840ConfigurationThe three-dimensional arrangment of groups about a stereocenter in a molecule.62
1588699841ConformationA shape that a molecule can assume by rotation about a single bond.63
1588699842Conformational analysisAnalysis of the energies of the various conformations of a compound.64
1588699843Conjugate acidThe acid formed by protonation of a base in an acid-base reaction.65
1588699844Conjugate addition or 1,4-additionThe addition of a nucleophile to the B-carbon of an a,B-unsaturated carbonyl compound.66
1588699845Conjugate baseThe base formed by the loss of a proton from an acid in an acid-base reaction.67
1588699846Conjugated moleculeA molecule that has a series of overlapping parallel p orbitals on adjacent atoms.68
1588699847ConnectivityThe arrangement of bonded atoms in a structure.69
1588699848ConrotationRotation of orbitals in the same direction in an electrocyclic reaction.70
1588699849Constitutional isomersCompounds that have the same molecular formula but a different arrangement (connectivity) of bonded atoms.71
1588699850Coupling constant (Jax)The separation between two adjacent peaks in a group of peaks that results from coupling in an NMR spectrum.72
1588699851Covalent bondingBonding that results from atoms sharing electrons in order to arrive at the same number of electrons as a noble gas.73
1588699852Cross-linkA group that connects separate polymer chains by covalent bonds.74
1588699853Crystalline solidA solid in which the individual molecules are arranged with a very high degree of order.75
1588699854Cycloaddition reactionA pericyclic reaction in which two molecules react to form two new sigma bonds between the end atoms of their pi systems, resulting in the formation of a ring.76
1588699855Degenerate orbitalsOrbitals with the same energy.77
1588699856Degree of unsaturation (DU)The total number of multiple bonds plus rings in a compound. The DU is calculated by subtracting the actual number of H's in a compound from the maximum number of H's and dividing the results by 2.78
1588699857Delocalized MOA MO that extends around more than two atoms.79
1588699858DEPT-NMR (distortionless enhancement by polarization transfer)A technique used in 13C-NMR that allows the number of H's attached to each C to be determined.80
1588699859Dextrorotatory (d) or (+)Clock-wise rotation of plane-polarized light.81
1588699860DiastereomersNon-mirror-image stereoisomers.82
15886998611,3-Diaxial interactionAn interaction that destabilizes two axial groups on the same face of a cyclohexane ring because of steric crowding between them.83
1588699862DienophileThe species, most often an alkene or alkyne, that acts as the two-electron component in a Diels-Alder reaction.84
1588699863Dihedral angleThe angle between the a marker group on the front atom and on the back atom of a Newman projection.85
1588699864Dipolar ion or zwitterionA neutral compound containing a covalently linked cation and anion.86
1588699865Dipole moment (u)The product of the amount of charge separation in a molecule x the distance of the charge separation.87
1588699866DisaccharideA carbohydrate formed from two monosaccharide units that are connected by a glycosidic bond.88
1588699867DisrotationRotation of orbitals in opposite directions in an electrocyclic reaction.89
1588699868DownfieldA chemical shift at a higher delta value in the NMR spectrum.90
1588699869ELetter used to designate the isomer of an alkene that has the high priority groups on opposite sides of the double bond.91
1588699870E1 reaction or unimolecular elimination reactionAn elimination reaction that occurs in two steps through a carbocation intermediate.92
1588699871E2 reaction or bimolecular elimination reactionAn elimination reaction that follows a concerted mechanism in which a base removes a proton simultaneously with the departure of the leaving group.93
1588699872Eclipsed conformationConformation in which the bonds on one atom are directly in line with the bonds on the adjacent atom when a Newman projection is viewed.94
1588699873Electrocyclic reactionA pericyclic reaction that forms a sigma bond between the end atoms of a series of conjugated pi bonds within a molecule.95
1588699874Electromagnetic spectrumThe range of electromagnetic radiation (light), from very energetic cosmic rays to low-energy radio waves.96
1588699875ElectronegativityElectron-attracting ability of an atom.97
1588699876Electronic transitionThe excitation of an electron from an occupied MO to an antibonding MO.98
1588699877ElectrophileAn electron-poor species that seeks an electron rich site; similar to a Lewis acid.99
1588699878Electrophilic addition reactionA reaction that results in the addition of two groups, an electrophile and a nucleophile, to the carbons of a CC double or triple bond.100
1588699879Electrophilic aromatic substitutionA reaction in which an electrophile is substituted for a hydrogen on an aromatic ring.101
1588699880Elimination reactionA reaction in which groups (most commonly a proton and a leaving group) are lost from an adjacent atoms, resulting in the formation of a double bond.102
15886998811,1-EliminationAn elimination of two groups from the same C to produce a carbene; also called alpha elimination103
15886998821,2-EliminatinonAn elimination of two groups from adjacent atoms to produce a pi bond; also called beta elimination.104
1588699883EnantiomersNonsuperimposable mirror-image stereoisomers.105
1588699884Endergonic reactionA reaction for which the change in standard Gibbs free energy is positive; the products are higher in energy than the reactants and the reaction favors the reactants at equilibrium.106
1588699885Endothermic reactionA reaction for which the enthalpy change is positive.107
1588699886EnolA compound with a hydroxy group attached to a CC double bond.108
1588699887Enolate ionA carbanion adjacent to a carbonyl group.109

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