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KRW- Bio- Ch 17 Flashcards

From Gene to Protein

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192499880Gene expressionthe process by which DNA directs the synthesis of proteins (or in some cases just the RNA) the expression of genes that code for proteins includes two stages: transcription and translation DNA inherited by an organism leads to specific traits by dictating the synthesis of proteins and of RNA molecules involved in protein synthesis
192499881Evidence from study of metabolic defects1909 Archibald garrod was the first to suggest that genes dictate phenotypes through enzymes that catalyze specific chemical reactions in the cell Biochemists since then have accumulated much evidence that cells synthesize and degrade most organic molecules via metabolic pathways and in which each chemical reaction in a sequence is catalyzed by a specific enzyme; such metabolic pathways lead, for instance, to the synthesis of pigments that give fruit flies their eye color Garrod as the first to recognize that mendel's principles of heredity apply to humans as well as peas Gene dictates the production of a specific enzyme
192499882Beadle and TatumHypothesis: Since Neurospora grows on minimal media, must have enzymes that convert simple compounds to amino acids necessary for growth Neurospora species grow on a minimal medium containing sugar, inorganic salts and vitamin biotin This means that they have metabolic pathways that makes proteins including enzymes Neurospora species are all haploids This means it is possible to study the expression of genes without worrying about dominance or recessive alleles. Any mutations should be easy to detect since mutations will not be masked by another allele. Irradiated a large number of Neurospora, and thereby produced some organisms with mutant genes Mutation was linked to not being able to make the necessary amino acids Tested all the amino acids, and found that the mutant grew with arginine Some mutant spores could not grow without addition of specific amino acid---arginine Arginine pathway is not a simple pathway, involves several different steps and several different enzymes MOlecules are syntheized as a series of steps each catalyzed by an enzyme; see a final product only when every enzyme in the pathway is working properly.
192499883Arginine PathwayStarts with precursor (arg 1) to enzyme X; to produce ornithine...and so on knowing the pathway, how do you know which enzyme is disrupted?
192499884How do you know which enzyme is defective?2nd: first gene inactivated, so enzyme A was damaged (protein damaged) class II: enzyme B was damaged Class III: mutant in gene c, didn't have enzyme C, so needed arginine If you provide the substrate that bypasses the enzyme that converts it to substrate, you can know which enzyme is defective Gene is damaged so protein wasn't made GENE IS INVOLVED IN PROTEIN MAKING
192499885Compound A-E are required to synthesize compound G necessary for growth, can you figure out the order in which they are synthesized by the wild-type cell?1. The compounds that are used latest in the pathway will support the growth of the most mutants 2. The compounds that are used earliest in the pathway will allow the growth of the fewest mutants
192499886Conclusions from Beadle and TatumConclusions: Genes control biochemical reactions by producing enzymes Biochemical reactions in vivo (in living cells) consist of discrete, step by step reactions Each reaction is specifically catalyzed by an enzyme Each enzyme is specified by a gene One gene one polypeptide idea
192499887From gene to proteinDNA--->RNA (Transcription) RNA--->Protein (translation) Genes provide the instructions for making specific proteins; but a gene doesn't not build a protein directly. The bridge between DNA and protein synthesis is the nucleic acid RNA (had a ribose instead of deoxyribose and uracil not thymine)
192499888Transcriptionis the synthesis of RNA under the direction of DNA; both nucleic acids use the same language, and the information is simply transcribed, or copied, from one molecule to another occurs in nucleus ; DNA serves as a template for assembling a complementary strand for RNA nucleotides
192499889Messenger RNAthe copy of DNA made from the DNA template inside the nucleus; carries genetic message from the DNA to the protein-synthesizing machinery of the cell
192499890Translationsynthesis of a polypeptide which occurs under the direction of mRNA; during this stage there is a change in language; the cell must translate the base sequence of mRNA into the amino acid sequence of a polypeptide; the sites of translation are ribosomes Cytoplasm
192499891Ribosomessite of translation of amino acids to polypeptides; complex particles that facilitate the orderly linking of amino acids into polypeptide chains
192499892BActeria vs Mammalsimilar transcirption and translation; But: BActeria- lack of segregation between DNA and ribosomes allows transcription to still be going on when translation begins
192499893Primary transcriptthe initial RNA transcript form any gene, including those coding for RNA that is not translated into protein (before it leaves for cytoplasm is is modified)
192499894triplet codewhen biologists began to suspect that the instructions for protein synthesis were encoded in DNA; there was a problem-only 4 nucleotide bases to specify 20 amino acids ; many bases must correspond to one amino acid Flow of information from gene to protein is based on a triplet code the genetic instructions for a polypeptide chain are written in DNA as a series of nonoverlapping, three nucleotide words; for example base triplet AGT at a particular position along a DNA strands results in placement of the amino acid serine at the corresponding position of the polypeptide being produced
192499895Template Strandonly one of the two DNA strands is transcribed; this is the template strand because it provides the pattern or template for the sequence of nucleotides in an RNA transcript ; a given DNA strand is a template strand for some genes along a DNA molecule; for one gene-the same template is used every time mRNA is complementary rather than identical to DNA template because RNA bases are assembled on the template according to base-pairing rules RNA is syntheiszed in an anti-parallel strand
192499896Codonsthe mRNA base triplets to triplet DNA codes During translation, the sequence of codons along an mRNA molecule is decoded, or translated, into a sequence of amino acids, making up a polypeptide chain; codons read in a 5'--->3' direction ex. UGG is the codon for Trp;
192499897Compare and contrast the functioning of DNA and RNA polymerases
192499898How many codons are there?64, all decoded by mid-1960s The redundancy in the genetic code has a reason; the codons that specify the same amino acid only differ in the third base of the triplet
192499899Termination codonsstop signals (UAA, UAG, UGA) Do not designate amino acids
192499900Reading frameour ability to extract the intended message from a written language depends on reading the symbols in the correct groupings; read in non-overlapping codon triplets In biology, a reading frame is a contiguous and non-overlapping set of three-nucleotide codons in DNA or RNA. There are 3 possible reading frames in an mRNA strand and six in a double stranded DNA molecule due to the two strands from which transcription is possible. An open reading frame starts with an atg (Met) in most species and ends with a stop codon (taa, tag or tga).
192499901Evolution of genetic codenearly universal, shared by organisms from the simplest bacteria to the most complex plants and animals
192499902What polypeptide product would you expect from poly-G mRNA that is 30 nucleotides?A polypeptide made up of 10 Gly (glycine) amino acids
192499903The template strand of a gene contains the sequence 3' TTCAGTCGT'5'. Draw the nontemplate sequence and mRNA sequencdTemplate: 3' TTCAGTCGT 5' Nontemplate: 5' AAGTCAGCA 3' mRNA sequence 5' AAGUCAGCA 3'
192499904Imagine that the nontemplate sequence in question 2 was rascribed instead of the template sequence. Draw the mRNA sequence and translate it using figure 17.5. Predict how well the protein syntheiszed from nontemplate strand would function.Template (from nontemplate sequence in problem writtein 3' to 5'): 3' ACGACTGAA 5' mRNA sequence: 5' UGCUGACUU 3' Translated: cys-stop-Leu
192499905RNA Polymerasepries the two strands of DNA apart adn joins the RNA nucleotides as they base-pair along the DNA template; like DNA polymerase that functions in DNA replication, RNA polymerases can assemble a polynucleotide only in its 5'--->3' direction; however RNA polymerases don't need a primer, can start a chain from scratch
192499906promoterthe dna sequence where RNA polymerase attaches an initiates transcription is known as promoter; in bacteria, the sequence that signals the end of transcription is terminator promoter is upstream from terminator Start point of transcription, extends several dozen nucleotide pairs upstream from the start point, and determines which of the two strands of the DNA helix is used as the template
192499907RNA polymerase in eukaryotes vs bacteriaEukaryotes: 3 types bacteria: 1 type
192499908The coding region of a gene is 1500 base pair.How many amino acids exist in the protein encoded by this gene500
192499909An Average size protein is 400 amino acids. How many nucleotides are required to code for the protein?1200
192499910transcription unitthe stretch of dna that is trascribed into RNA molecule
192499911three stages of transcription1. initiation=AFter RNA polymerase bind to the promoter, the DNA strands unwind, and the polymerase initaties RNA synthesis at the start point of the template strand 2. elongation= The polymerase moves downstream, unwinding the DNA and elongating the RNA transcript 5' to 3'. In the wake of transcription, teh DNA strand re-form a double helix (orks on about 10 to 20 DNA bases at a time; adds nucleotides to the 3' end of the growing RNA molecule 3. termination of RNA chain=Eventually the RNA transcript is released, and the polymerase detaches from DNA; in bacteria transcription proceeds through a terminator sequence in the DNA; eukarytoes RNA polymerase II transcribes a sequence on the DNA called polyadenylation signal sequence
192499912Transcription factorsa collection of proteins mediate the binding of RNA polymerase and the initiation of transcription ; proteins play a role in making the DNA more accessible to the transcription factors
194452336Central DogmaCells are governed by a molecular chain of command with a directional flow of genetic information DNA -->RNA--->protein
194452337Terminatorthe sequence that signals the end of transcription
194452338Transcription initiation complexthe whole complex of transcription factors and RNA polymerase II bound to the promoter
194452339TATA Boxcrucial promoter DNA sequence Binding site for RNA polymerase
194452340polyadenylation signal sequencein termination stage of transcription; about 10 to 20 nucleotides down, proteins assocated with the growing RNA transcript cut it free fromt eh polymerase
194452341Compare and contrast DNA polymerase and RNA polymerase in terms of function, template/primer, direction, and types of nucleotides
194452342What is the promoter, and is it located at the upstream or downstream end of a transcription unit?The region of DNA to which RNA polymerase binds to begin transcription; upstream end of the gene
194452343What makes RNA polymerase start transcribing a gene at the right place ont he DNA in a bacteria cell? in a eukaryotic cell?In a bacteria- RNA polymerase recognizes the gene's promoter and binds to it; Eukaryotic- transcription factors mediate the binding of RNA polymerase to the promoter
194452344Before RNA leaves the nucleus, two things happen..1. RNA transcript is modified 2. Non-coding regions are excised Modification protects mRNA from being degraded in cytoplasm
194452345RNA processingboth ends of the primary transcript are altered; certain interior sections of the RNA molecule are cut out and the remaining parts spliced together; these modifications produce a mRNA ready for translation
194452346Alteration of mRNA endsEach end of pre-mRNA molecule is modified in a particular way; 5' end modified first; receives a 5' cap modified form of a guanine nucleotide added onto the 5' end after transcription of the first 20 to 40 nucleotides 3' end of hte pre-mRNA molecules is also modified before the mRNA exist the nucleus; at teh 3' end, an enzyme adds 50 to 250 more adenine nucleotides forming a poly-A tail
1944523475' capmodified form of a guanine nucleotide added onto the 5' end
194452348poly-A tailat the 3' end, an enzyme adds 50 to 250 adenine nucleotides making this tail
194452349Functions of poly-A tail and 5' cap1. facilitate the export of the mature mRNA from the nucleus 2. they help protect the mRNA from degradation by hydroyltic enzymes 3. they help ribosomes attach to the 5' end of the mRNA once the mRNA reaches the cytoplasm
194452350RNA splicingThe most remarkable stage of RNA processing occurs during the removal of a large portion of the RNA precursor molecule via splicing. The average transcription unit is about 27,000 base pairs, but it only takes 1200 nucleotides to code for an average size protein of 400 amino acids; this means that most eukarytoic genes and their RNA transcripts have long noncoding stretches of nucleotides and sometimes noncoding stretches lie imbetween coding segments (make them split up) RNA splicing removes introns and joins exons to create an mRNA molecule with a continuous coding sequence.
194452351intronsnoncoding segments of nucleic acid that lie between coding regions; intervening sequences
194452352exonseventually expressed; coding part; spliced together the mRNA that enters the cytoplasm is an abridged version of what the RNA polymerase II originally produced
194452353Ho s pre-mRNA spliced?Particles called small nuclear ribonucleoproteins snRNPs recognize these splice sites;
194452354snRNPslocated in the cell nucleus and are composed of RNA and protein molecules; RNA in snRNP is called small nuclear RNA snRNA Several snRNPs join with additional proteins to make a larger assembly called a splicesome
194452355splicesomeSeveral snRNPs join with additional proteins to make this larger assembly; interacts with certain sites along an intron, releasing the intron adn joining together the two exons that flanked the intron
194452356What is in a splicesome?1. pre-mRNA 2. proteins 3. small nuclear ribonucleoproteins (snRNPs)—ribozymes (catayltic activity) snRNA base-pairs with nucleotides at the ends of the intron. The RNA transcript is cut to release the intron, and the exons are joined together.
194452357RibozymesRNA molecules that function as enzymes; idea of cataylitc role for snRNA arose from the discovery of these Three properties enable some RNA molecules to function as enzymes 1. RNA is a single stranded, a region of an RNA molecule may base-pair with a complementary region elsewhere in the same molecule, which gives the molecule a particular 3-d shape 2. some of the bases RNA contain functional groups that may participate in catalysis 3. ability of rNA to hydrogen-bond with other nucleic acid molecules adds specificity to its catalytic activity
194452358Functional importance of intronsThe presence of introns increases the probability of potentially beneficial crossing over between genes. (exon shuffling) There may also be occasional mixing and matching of exons between completely different genes. One gene can encode more than one kind of a polypeptide Proteins often have modular architecture consisting of discrete structural and functional regions called domains ; one domain of an enzymatic protein might include the active site, hile another might attach the protein to a cellular membrane
194452359alternative RNA splicingmany genes are known to give rise to two or more different polypeptides, depending on which segments are treated as exons during RNA processing
194452360domainsProteins often have modular architecture consisting of discrete structural and functional regions
194452361How does alteration of the 5' and 3' ends of pre-mRNA affect the mrRNA that exists int he nucleus?The 5' cap and poly-A tail facilitate mRNA export from the nucleus, prevent the mRNA from being degraded by hydroyltic enzymes, and and facilitate ribosome attachment
194452362How is RNA splicing similar to video editingIn editing a video introns are cut out and discarded, while exons are joined together so that the regions of joining are not noticeable
194452363A gene that codes of ATPase has two alternatives for exon 4 and three alternatives for exon 7, how many different forms of a protein could be made from this gene?6 different forms could be made because alternative splicing could generate six different mRNAs
194452364Functional importance of poly-adenylation1. Facilitate the export of mature RNA from nucleus to cytoplasm 2. Protects RNA from degradation by hydrolytic enzyme in cytoplasm 3. Help ribosome attachment to 5' end of the mRNA
194452365What happens in translation?a cell interprets a genetic message and builds a polypeptide accordingly ;
194452366Message?series of codons along a mRNA
194452367interpreter?Transfer RNA (tRNA)
194452368tRNAFunction: to transfer amino acids from the cytoplasmic pool of amino acids to the ribosomes; cell keeps about 20 amino acids on stock ribosome adds each amino acid brought to it by tRNA to the growing end of a polypeptide chain molecules of tRNA are not the same; each type of tRNA translates a partciular mRNA codon into a particular amino acid
194452369anticodonat the other end of the tRNA is anucleotide triplet called an anticodon, which base-pairs with a complementary codon on mRNA ex. mRNA has UUU (phenylalanine); tRNA base-pairs by hydrogen bonding AAA as its anticodon and carries phenylalanine at its other end; As mRNA molecule moves through ribosome, phenylalnine will be added whenever the codon UUU is presented for translation
194452370Where does amino acids attach?3' end
194452371Structure of tRNAtranscribed from DNA templates ; made in nucleus and mus ttravel from nucleus to cytoplasm; tRNA is used repeatedly Single RNA strand that is only about 80 nucleotides long; because of the complementary stretches of bases that can hydrogen-bond to each other, this single strand can fold back upon itself adn form a molecule with a 3-d structure twists and folds into a complicated 3'd shape
194452372Accurate translation of a genetic message requires two processes that involve molecule recognition1. tRNA that binds to an mRNa codon specifying a particular amino acid must carry that amino acid, and no other to the ribosomes 2. matching up the tRNA anticodon with the appropriate mRNA codon; if one tRNA variety exists for each mRNA codon that specifies an amino acid, there would be 61 tRNAs
194452373Aminoacyl-tRNA synthetasesfamily of related enzymes; the correct matching up of tRNA and amino acid is carried out by aminoacyl-tRNA syntheases Active site of this only fits a specific combination of amino acid and tRNA; 20 different synthetases, one for each amino acid ; the synthetases catalyzes the covalent attachment of the amino acid to its tRNA in a process driven by the hydrolysis of ATP ; resulting is a tRNA or a charged tRNA, available to deliver its amino acid to a growing polypeptide chain on a ribosome
194452374charged tRNAavailable to deliver its amino acid to a growing polypeptide chain on a ribosome
194452375Wobble:flexible base pairing at htis codon position
194452376Ribosomesfacilitate specific coupling of tRNA anticodons with mRNA codons during protein synthesis; a ribosome is made up of to subunits (large and small)
194452377Ribosomal subunits-composed of?proteins and RNA molecules called ribosomal RNAs or rRNAs; in eukaryotes made in nucleolus
194452378Function of ribosomesbringing mRNA and tRNA carrying amino acids together has binding sites for mRNA and three for tRNA P site, A site, E site Catalyzes the formation of the peptide bond; as the polypeptide becomes longer, it passes through an exit tunnel in the ribosome's large subunit; when polypeptide is complete, it exits
194452379P sitepepetidyl-tRNA site; holds the tRNA carrying the growing polypeptide chain
194452380A siteholds the tRNA carrying the next amino acid to be added to the cain
194452381E sitedischarged tRNAs leave the ribosome from this site; exist site
194452382Steps of translationTranslation can be divided into three stages: Initiation Elongation Termination All three phase require protein "factors" that aid in the translation process. Both initiation and chain elongation require energy provided by the hydrolysis of GTP.
194452383Initiationbrings together mRNA, a tRNA bearing the first amino acid of the polypeptide, and the two subunits of a ribosome 1. small ribosomal subunits bind to a molecule of mRNA; mRNA binding site on this subunit recognizes a specific nucleotide sequence on the mRNA just upstream of the start codon; an initator tRNA with the anticodon UAC, base-pairs with the start codon AUG; tRNA carries amino acid MET 2. The arrival of a large ribosomal subunit completes the initiation complex
194452384Initiation factorsproteins required to bring all the translation components together ; GTP provides the energy
194452385Elongationpeptide bonds between amino acids!
194452386TerminationTermination occurs when one of the three stop codons reaches the A site. A release factor binds to the stop codon Hydrolyzes the bond between the polypeptide and its tRNA in the P site freeing the polypeptide The translation complex disassembles.
194452387PolyribosomesTypically a single mRNA is used to make many copies of a polypeptide simultaneously. When multiple ribosomes translate the same mRNA the entire unit is called a polyribosome or polysome
194484336After translationthe process of translation is normally not enough to make a functional protein; modifications a polypeptide must undergo after translation
194484337Protein foldingduring synthesis, a polypeptide chain begins to coil and fold spontaneously due to amino acid sequence; forming a protein with a specific shape Gene determines primary structure and primary structure determines shape Chaperonin helps alot
194484338post-translational modificationsmay be required before the protein can begin doing its particular job in a cell; certain amino acids may be chemically modified by the attachment of sugars, lipids, phosphate groups or other additions Enzymes may remove one or mroe amino acids from teh elading end of the polypeptide chain; sometimes polypeptide chains are enzymatically cleaved into to or more pieces ex. Insulin polypeptide cut into two and held together by a disfuldie bond
194484339free ribosomessuspend and synthesize proteins to stay in cytoosol
194484340bound ribosomesmake proteins of the endmembrane system to be secreted from the cell like insulin
194484341single peptidetargets the protein in the ER; sequence of about 20 amino acids at or near the leading amino end of the polypeptide, is recognized as it emerges from the ribosome by a protein-RNA complex called a signal recognition particle
194484342SRPsingle recognition particle; functions as an adapter that brings the ribisome to a receptor protein built into the ER membrane ; this receptor is part of the a multiprotein translocation complex; polypeptide synthesis continues there adn the gorwing polypeptide snakes across the membrane into the ER lumen via a protein pore
194484343Golgi apparatus
194484344Chaperonin
194484345Types of RNA
194484346What two processes ensure that the correct amino acid is added to a growing polypeptide chain?First, each aminoacyl0tRNA synthetase specifically recognizes a single amino acid and attaches it only to an appropriate tRNA Second, a tRNA charged with its specific amino acid binds only to an mRNA codon for that amino acid
194484347Describe how information of polyribosomes can benefit the cell?Polyribosomes enable the cell to produce multiple copies of a polypeptide very quickly
194484348Describe how a polypeptide to be secreted is transported to the endomembrane system?A single peptide on the leading end of the polypeptide being synthesiezed is recognized by a signal-recognition particle that brings the ribosome to the ER membrane; there the ribosome attaches and continues to synthesize the polypeptide, depositing it on the ER lumen
194484349Discuss the ways in which rRNA structure likely contributes to ribosomal function.The structure and function of a ribosome depend more on rRNAs than on the ribosomal proteins
194484350Mutationsresponsible for the huge diversity of genes found among organisms because mutations are the ultimate source of new genes
194484351point mutationschemical changes in a single base pair of a gene
194484352Point mutations has a negative genotypical expressionmutant condition is a genetic disorder or heriditary disease ex. sickle clle can be traced to the change of a single nucleotide in the DNAs template strand makes an abnormal protein
194484353Types of point mutationsbase-pair substition missense mutations nonsense mutations insertions deletions frameshift mutation mutagens
194484354base-pair substitionreplacement of one nucleotide and its partner with another pair of nucleotides
194484355silent mutationsthey have no effected on encoded protein (redundancy of the genetic code)
194484356missense mutationssubstitions that change one amino acid to another; have little effect on the protein; the new amino acid may have properties similiar to those of the amino acid it replaces or may be in the region of the protein where the exact sequence of amino acids isnt necessary for funciton
194484357nonsense mutationpoint mutation can also change a codon for an amino acid into a stop codon; it causes translation to be terminated early and the polypeptide will be shorter than the original ; lead to nonfunctioning proteins
194484358Insertions/deletionsadditions or losses of nucleotide pairs in a gene; these mutations have a disastrous effec ton resutling protein more often than substituions do; May alter reading frame, the triplet grouping of bases on the mRNA that is read
194484359Frameshit mutationoccur whenever the number of nucleotides inserted or deleted is not a multiple of three; changes reading frame
194484360MutagensA number of physical and chemical agents, called mutagens , interact with DNA in ways that cause mutations. In the 1920s, Hermann Muller discovered that X-rays caused genetic changes in fruit flies. With X-rays, he was able to make Drosophila mutants that he could use in his genetic studies
194484361What happens when one nucleotide pair is lost from the middle of the coding sequence of the gene?In the mRNA, the reading frame downstream from the deletion is shifted, leading to a long string of incorrect amino acids in the polypeptide and, in most cases, a stop codon will arise, leading to premature termination; not functional!
194484362What is the most important difference between bacteria and eukarytoes with regard to gene expression?the bacteria's lack of compartmental organization
194484363What is a geneA gene is a region of DNA that can be expressed to produce a final functional product that is either a polypeptide or an RNA molecule
194484364Would coupling of processes shwon in 17.24 be found in a eukaryotic cel?No, because a eukartyoic cell is compartmentalized Translation and transcription are separated in space and time in a eukartyotic cell due to compartments
194484365In eukartyoic cells, transcription cannot begin until:B several transcription factors have been bound to the promotoer
194484366which of the following is not true of a codon?D. it extends from one end of a tRNA molecule
194484367The anticodon of a particular tRNA molecule isA. complementary to the corresponding mRNA codon
194484368Which of the following is not true of RNA processing?A. Exons are cut out before mrRNA leaves the nucleus True facts: Nucleotides may be added at both ends of the RNA Ribozymes may function in RNA splicing RNA splicing can be catalyzed by splicesome a primary transcript is often much longer than the final RNA molecule that leaves the nucleus
194484369Using figure 17.5 identify a 5 to 3' sequence of nucletoides in the DNA tmplate strand for an mRNA coding for polypeptide sequence PH PRO LYS. 5' CTTCGGGAA 3"
194484370Which of the folloing mutations would be most likely to have a harmful affect on an organismE. A single nucleotide insertion downstream of, and close to, the start codon
194484371Whcih component is not directly involved in translation?B. DNA

From Gene to Protein Flashcards

Chapter 17

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728077936Gene expressionThe process by which DNA directs the synthesis of proteins (or in some cases, just RNAs).
728077937TranscriptionProcess in which part of the nucleotide sequence of DNA is copied into a complementary sequence in RNA
728077938Messenger RNACarries a genetic message from the DNA to the protein-synthesizing machinery of the cell.
728077939TranslationSynthesis of a polypeptide using the information in the mRNA.
728077940RibosomesComplex particles that facilitate the orderly linking of amino acids into polypeptide chains
728077941Primary transcriptionAn initial RNA transcript; also called pre-mRNA when transcribed from a protein-coding gene.
728077942Directional flow of genetic informationDNA, -> RNA, -> Protein.
728077943Triplet CodeThe genetic instructions for a polypeptide chain are written in the DNA as a series of nonoverlapping, three-nucleotide words.
728077944Template strandThe DNA strand that provides the template for ordering the sequence of nucleotides in an RNA transcript.
728077945CodonsA three-nucleotide sequence of DNA or mRNA that specifies a particular amino acid or termination signal; the basic unit of the genetic code.
728077946Reading frameThe way a cell's mRNA-translating machinery groups the mRNA nucleotides into codons.
728077947RNA polymeraseAn enzyme that links together the growing chain of ribonucleotides during transcription.
728077948PromoterA specific nucleotide sequence in DNA that binds RNA polymerase and indicated where to start transcribing RNA.
728077949TerminatorA specific nucleotide sequence in DNA that signals the end of transcription.
728077950Transcription unitA region of a DNA molecules that is transcribed into an RNA molecule.
728077951Transcription factorA regulatory protein that binds to DNA and stimulates transcription of specific genes.
728077952Transcription initiation complexThe completed assembly of transcription factors and RNA polymerase bound to the promoter.
728077953TATA boxA promoter DNA sequence crucial in forming the transcription initiation complex.
728077954RNA processingModification of RNA before it leaves the nucleus, as process unique to eukaryotes.
7280779555 prime CapThe 5 prime end of a pre-mRNA molecule modified by the addition of a cap of guanine nucleotide.
728077956Poly-A tailThe modified end of the 3 prime end of an mRNA molecule consisting of the addition of some 50 to 240 adenine nucleotides.
728077957RNA SplicingThe removal of noncoding portions (introns) of the RNA molecule after initial synthesis (similar to editing a video)
728077958IntronsA noncoding, intervening sequence within a eukaryotic gene.
728077959ExonsA coding region of a eukaryotic gene.
728077960Splice-osomeA complex assembly that interacts with the ends of an RNA intron in splicing RNA, releasing the intron and joining the two adjacent exons.
728077961RibozymesEnzymatic RNA molecules that catalyze reactions during RNA splicing.
728077962Alternative RNA splicingA type of regulation at the RNA-processing level in which different mRNA molecules are produced from the same primary transcript, depending on which RNA segments are treated as exons and which as introns.
728077963DomainsAn independently folding part of a protein.
728077964Transfer RNAtRNA; An RNA molecule that functions as an interpreter between nucleic acid and protein language by picking up specific amino acids and recognizing the appropriate codons in the mRNA.
728077965AnticodonA specialized base triplet at one end of a tRNA molecule that recognizes a particular complementary codon on an mRNA molecule.
728077966Aminoacyl-tRNA synthetaseAn enzyme that joins each amino acid to the correct tRNA.
728077967WobbleA violation of the base-paring rules in the at the third nucleotide (' end) or a tRNA anticodon can form hydrogen bonds with more than one kind of base in the third position (3' end) of a codon.
728077968Ribosomal RNAsThe most abundant type of RNA, which together with proteins forms the structure of ribosomes.
728077969P siteOne of a ribosome's three binding sites for tRNA during translation. It holds the tRNA carrying the growing polypeptide chain. (P stands for peptidyl tRNA).
728077970A siteOne of a ribosome's three binding sites for tRNA during translation. It holds the tRNA carrying the next amino acid to be added to the polypeptide chain. (A stands for aminoacyl tRNA).
728077971E siteOne of a ribosome's three binding sites for tRNA during translation. It is the place where discharged tRNAs leave the ribosomes.
728077972PolyribosomesAKA polysome. An aggregation of several ribosomes attached to one messenger RNA molecule
728077973Signal peptideA stretch of amino acids on a polypeptide that targets the protein to a specific destination in a eukaryotic cell.
728077974Signal-recognition particleSRP. , A protein-RNA complex that recognizes a signal peptide as it emerges from the ribosome.
728077975Point mutationsA change in a gene at a single nucleotide pair.
728077976MutationsA rare change in DNA of a gene, ultimately creating genetic diversity.
728077977Nucleotide-pair substitutionA type of point mutation in which one nucleotide in a DNA strand and its partner in the complementary strand are replaced by another pair of nucleotides.
728077978Silent mutationA mutation that changes a single nucleotide, but does not change the amino acid created.
728077979Missense mutationThe most common type of mutation, a base-pair substitution in which the new codon makes sense in that it still codes for an amino acid.
728077980Nonsense mutationA mutation that changes an amino acid codon to one of the three stop codons, resulting in a shorter and usually nonfunctional protein.
728077981InsertionsA mutation involving the addition of one or more nucleotide pairs to a gene.
728077982DeletionsA mutational loss of one or more nucleotide pairs from a gene.
728077983Frameshift mutationA mutation occurring when the number of nucleotides inserted or deleted is not a multiple of three, resulting in the improper grouping of the following nucleotides into codons.
728077984MutagensA chemical or physical agent that interacts with DNA and causes a mutation.

American History Chapters 1,2 and 3 Flashcards

I have the main vocabulary and further descriptions to main ideas for these chapters. Hopefully its helpful:)!

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504299151What was the Iroquois League? What were its key characteristics?a confederation, a loose group of governments working together, set up to settle disputes among the people peacefully.There are 5 different Indian groups together; Mohawks,Oneidas,Onondagas, Cayugas, and Senecas.
504299152What were the Middle Ages and the Renaissance?1. middle ages was the time of religion 2. Renaissance was the time of reason 3. MA boring no inventions no new ideas 4. RN was all about the new and rediscovery 5. MA there were a lot of battles over land 6. RN not a lot of public battle more privet
504299153Who was Mansa Musa?one of the richest and most powerful kings of Mali; doubled size of kingdom; created strong central government; divided Mali into provinces
504299154How did Mansa Musa increase the influence of Islam?Expanded Mali's domain Westward to the Atlantic Coast.
504299155Who was Heran Cortes?Born 1485 University training as a Lawyer and he was also a Conquistador-fought Indian civilizations.
504299156Define Adobe. Which American Indian group used adobe and what did they use it for?Adobe-Sun-dried bricks The Southwest people: Hohokams Apaches Pueblo Zunis Navajos Pimas Hopis They used it for homes and buildings
504299157How did the spread of civilization begin in the Americas.The first setterlers traveled around the Americas. The indians also traveled around what is now known as the United States.
504299158How did European exploration affect the Americas?They brought strange plants, farm animals, horses and disease.
504299159What was life like in West Africa before the age of European Exploration?In West Africa they had slaves also but they were treated with more rights. You became a slave if you commited a crime or if you were an undesierable. Slaves had the right to marry and there children had the right to live a nonslavery life. Some Slave kids even became very powerful people.
504299160How did Europeans begin to explore more of the world?They used ships to sail to the new world.
504299161Define Viceroy. Where did they have power?A governor who ruled as a representative of a Monarch. New Spain Viceroy: Mexico,Central America,Caribbean Islands Peru Viceroy: South America except Portuguese Brazil
504299162Who was Samuel de Champlain? What relationship did he have with the Native Americans?French merchants wanted the wealth that came from the fur trade. A group of French merchants hired Samuel de Champlain to find a place to build a settlement. Samuel de Champlain was a French explorer who founded Quebec in what is now Canada. He was also a intrepid soldier who became known as the "Father of New France" who entered into friendly relations with the Huron Indians and helped them defeat the Iroquois.
504299163How did royal colonies differ from proprietary colonies?The Royal colonies belonged to the Crown and the Proprietary colonies belonged to powerful individuals or companies.
504299164What was the Mayflower Compact? What was its most important principle?First written plan of government, that had direct democracy; with majority rule. Self-goverment
504299165Who were the Quakers?A new religious group in England, they believed that all people had a direct link with God and did not need ministers. Their fundamental belief was that all people were equal in God's eyes..spoke out against slavery and esablished both men's and women's leadership for their meetings. Their leader was William Penn.
504299166Define Presidios.Spanish Forts
504299167People who work to convert others to their religion.Missionaries.
504299168Define Mestizos.Children with mixed Spanish and Indian Ancestry.
504299169A water route to Asia through the cold waters of present day Canada.Northwest Passage
504299170Define charterCertificate of permission from the king .
504299171First representative body in colonial americaHouse of Burgesses
504299172Define Bacon's RebellionWhen Berkeley protested, Bacon marched his armed followers to Jamestown and burned the town.
504299173The rivalry over control of the trade, coupled with Indian opposition to English territorial expansion led to the outbreak of the _________.Pequot War.
504299174_________ motivated people to leave their home countries.Push Factors
504299175_________ attract people to a new location.Pull Factors
504299176Define Indentured Servant. What future would a Indentured Servant expect?Poor immigrants who paid for passage to the colonies by agreeing to work for 4 to 7 years. A hard work life for 4 to 7 years.
504299177What was the Magna Carta?A document English nobles forced King John to accept in 1215. It protected English nobles by limiting the king's ability to tax them and guaranteeing due process, or the right to a trial.
504299178What was the great Awakening?A religious Movement swept through the colonies
504299179What was the French and Indian War?A battle declared by the British against the French and Native Americans for control over North America.
504299180What was the Pontiac's Rebellion?The Indians attacked many British forts. Main goal was to weaken the British and to lure the French back into North America
504299181Define MercantilismMaking money for the Mother Country An economic policy under which nations sought to increase their wealth and power by obtaining large amounts of gold and silver and by selling more goods than they bought
504299182Crops grown for saleCash Crops
504299183Crops that are in steady demandStaple Crops

American Colonies Flashcards

American colonies and their roles.

Terms : Hide Images
234050VirginiaSouthern colony with Jamestown, main crop tobacco
234051MarylandFounded by Lord Baltimore, safe haven for Catholics, Act of Toleration
234052South CarolinaSupply station for indies, rice plantations
234053North CarolinaOutcasts from SC and VA, hospitable to pirates
234054GeorgiaBuffer state with Spanish Florida, "charity colony" with many shady people
234055MassachusettsPuritans lead by William Bradford, landing site of Pilgrims. Later lead by John Winthrop, "city on a hill"
234056Rhode IslandEstablished by Roger Williams who was kicked out of MA, religious toleration and "Lord's Debris"
234057ConnecticutEst by Reverend Thomas Hooker, self-governing, creates Fundamental Orders
234058New HampshireFishing and trading overgrowth of MA
234059New YorkOriginally Dutch settlement, Duke of York threatens his way into the land
234060PennsylvaniaQuaker colony, lead by William
234061New JerseyDuke of York gives parts to Berkely and Carteret, which goes to Quakers
234062DelawareOriginally by Swedes, taken over by Dutch, then controlled by PA

Linebarger - Unit 1 - Exploration & Colonization Flashcards

Unit 1 : Exploration & Colonization
Grade 8 American History
Henderson Middle School
Henderson, Texas

Terms : Hide Images
494385800Catholicsreligious group that settled in Maryland
494385801Quakersreligious group that settled in Pennsylvania
494385802Puritansa group of Anglican church members in England who wanted to "purify" their church of Catholic ways
494385803plantationsanother name for large-scale agriculture
494385804Mayflower CompactIn 1620, this document was signed by the forty-four adult men on a ship to the colonies; it was the first agreement for self-government in the American colonies; set up the government for the Plymouth Colony
4943858051607In this year was the founding of Jamestown; the first permanent settlement in the American colonies
494385806Appalachian Mountainsthis landform acted as a barrier to westward expansion
494385807Virginia ColonyThe location of Jamestown
494385808Pennsylvania ColonyThe location of Philadelphia
494385809Massachusetts Bay ColonyThe location of Boston
494385810New York ColonyThe location of New York City
494385811How were slaves and free-blacks alike in Colonial America?slaves or free-blacks COULD NOT vote
494385812PocahontesThe Native-American woman who helped John Smith and the Jamestown colonists survive the first brutal winter
494385813eraperiod of time
494385814Fur trapping and tradeThe economic activity of French colonists
494385815agrariananother word for farming
494385816Fundamental Orders of ConnecticutIn 1638; first written constitution in the colonies; stated that the people had the right to elect governors, judges, and a legislature; was written by the people
494385817House of Burgessescreated in 1619; first representative assembly - elected by the people - in the American colonies -Virginia; set the precedent for individual rights protected by law - British law did not provide this at the time this document was written.
494385818population densitynumber of people in a square mile or kilometer
494385819geographyprimary cause of economic differences among the colonies in North America
494385820DutchThe group that originally settled in New York Colony; settled for economic reasons
494385821cash cropsgrown for profit in the Southern colonial region - rice, cotton, indigo, tobacco and sugar
681542907Columbian ExchangeThe exchange of plants, animals, diseases, and technology between the Americas and the rest of the world following Columbus' voyages
681542908Great Migrationmore than 15,000 Puritans journeyed to Massachusetts to escape religious persecution and economic hard times; an example of a push-pull factor
681542909Joint-stock Companya business in which investors pool their wealth in order to turn a profit; an example is the Virginia Company who sent the colonists to Jamestown
681542910indentured servantlaborer who agreed to work without pay for a certain period of time in exchange for passage to the American colonies
681542911Northwest Passagea waterway through or around North America
681542912PilgrimsEnglish Puritans who founded Plymouth colony in 1620
681542913subsistence farmingfarming in which only enough food to feed one's family is produced - the type of farming in the New England colonial region
681542914Triangular tradea three way system of trade during 1600 - 1800s; Africa sent slaves to America. America sent raw materials to Europe. Europe sent guns and rum to Africa.
726256792Events of the Exploration and Colonization Eraestablishment of the 13 colonies, representative democracy, mercantilism, religious freedom
726256793Reasons for European Explorationreligion, wealth, fame, national pride, curiosity, and a faster, cheaper trade route to Asia; sometimes referred to as GOD, GOLD, and GLORY
726256794Reasons for European Colonizationreligious and political freedom, mercantilism - economic opportunity, social mobility - land, a better way of life
726256795Reasons for the growth of representative government during the colonial periodDistance from England, colonists were used to English traditions and structures - parliamentary system - Parliament, most colonies were self governing due to their isolation from other communities
726296977How did religion and virtue contribute to the growth of representative government in the American colonies?religious freedom was a cause for colonization and religious groups - Puritans, Pilgrims, Quakers - were the first to create colonies that were self-governed
726296978What was the impact of slavery on the colonial southern region?slaves viewed as property and source of labor; aided in the development of the plantation system and the agrarian South
726296979Colonies of the New England Colonial RegionMassachusetts Bay, Rhode Island, Connecticut, New Hampshire
726296980Colonies of the Middle Colonial RegionNew York, Pennsylvania, New Jersey, Delaware
726296981Colonies of the Southern Colonial RegionMaryland, Georgia, North Carolina, South Carolina, Virginia
726296982Physical Characteristics of the New England Colonial RegionAtlantic Ocean; poor soil; cold climate; forest
726296983Human Characteristics of the New England Colonial Regioneconomic - raw materials, logging, fishing, shipbuilding, manufacturing political - town meetings, representative government social - small coastal towns (Boston) religious - Puritans, Pilgrims
726296984Physical Characteristics of the Middle Colonial Regionrich soil; broad, deep rivers; more natural ports; river valleys; mild winters; raw materials; Atlantic Ocean
726296985Human Characteristics of the Middle Colonial Regioneconomic - large farms, colonial "breadbasket", logging, fishing, shipbuilding, cattle political - more tolerance social - small coastal towns - Philadelphia, Baltimore, New York religious - Quakers
726296986Physical Characteristics of the Southern Colonial RegionAppalachian Mountains; navigable rivers; richer soil; warm climate; raw materials; Atlantic Ocean
726296987Human Characteristics of the Southern Colonial Regioneconomic - plantations; cash crops - cotton, tobacco, sugar, rice, indigo political - more slaves, more class based society social - small coastal towns - Savannah, Charleston religious - Church of England, Catholics
726314203Population density of the New England and Middle Regionsaccess to waterways - ports and rivers - resulted in a high population density
726314204Population density of the Southern Colonial Regionabundant amount of fertile soil that resulted in an agrarian economy, a plantation system, and a low population density.
726314205What immigrant groups came to the colonies and how did they interact with their environment?French fur trappers; British farmers; Dutch businesses; Spanish missions; African American slaves
726314206Reasons for the development of the plantation systemlarge amounts of land; rich soil; almost year round growing season; slave labor
726314207Reasons for the development of the Transatlantic slave tradestarted in the West Indies to provide a labor force for the sugar plantations; triangular trade between the colonies, England and the West Indies
726314208Reasons for the spread of slaverydemand for rice, indigo, tobacco, cotton and sugar led to plantation owners needing more slaves and the slave trade increased
726340502Thomas Hookerfounded the colony of Connecticut; influenced the writing of the Fundamental Orders of Connecticut
726340503Charles de Montesquieuwrote about separation of powers; expanded on Locke's ideas - judiciary branch; believed that education is an absolute necessity in a republic
726340504John Lockebelieved that personal liberty could co-exist with political order; discussed an executive and legislative branch of government; wrote about unalienable rights - life, liberty and the pursuit of happiness; heavily influenced the writing of the Declaration of Independence
726340505William Pennfounded the colony of Pennsylvania where Quakers could live according to their religious beliefs
726340506Anne Hutchinsonled Bible studies against the orders of church leaders in Massachusetts Bay Colony
726340507Roger Williamsfounded the colony of Rhode Island; called for separation of church and state
726340508First Great Awakeningdemocratized the Protestant faith by proclaiming salvation for all, not just those predestined; encouraged the ideas of equality and the right to challenge authority; contributes to the revolutionary idea of independence from Britain years later
727638687representative governmentpower is held by the people and exercised through the efforts of representatives elected by those people
727638688explorationtravel for the purpose of discovery
727638689chartera contract given to someone to establish a colony
727638690push factorsthings that push people away from a country or location
727638691pull factorsthings that pull or draw people to another country or location
727638692emigrateto leave a country
727638693immigrateto go into a country

the lost temple of the aztecs Flashcards

Terms : Hide Images
319194308adornedto decarate0
319194309causcwaysa raised roadway acress water or marshland1
319194310conquereddefeated in battle2
319194311empirea large area made up of many territories under one government3
319194312intricatecomplicated made up of many details4
319194313metrupolisa mojor city a centor of culture5
319194314momentousof great importance6
319194315sitesthe place where things were are or will be locoted7
319194316tridutesa small item of little walue8

MAYAS/AZTECS/INCAS Flashcards

Terms : Hide Images
26324482terracesagricultural technique used to farm in the mountains0
26324483Aztec prieststhey studied the sky, predicted the future, & ran schools1
26324484Cuzcothe capital of the Inca empire2
26324485Tikal & Chichen Itzaimportant Mayan cities3
26324486Tenochtitlanthe capital of the Aztec empire4
26324487Yucatan Peninsula & Guatemalaarea where the Mayans lived5
26324488Central Mexicoarea where the Aztecs lived6
26324489the Andesmountain range where Incas lived7
26324490pyramidsreligious buildings used by Aztecs and Mayans8
26324491Francisco Pizarroconquered the Incas in 15329
26324492Hernan Cortesconquered the Aztecs in 152110
26324493corbel vaultan arch developed by the Mayans11
26324494quipusknotted strings used by the Incas to count and remember12
26324495trephinationadvanced brain surgery developed by the Incas13
26324496causeways & aqueductstechnologies Aztecs needed to build Tenochtitlan on an island14
26324497Olmecsthe civilization that influenced the Mayas15
26324498Post-Classic Mayawhen Mayans abandoned their cities & produced few cultural achievements16
26324499messenger relay systemhow the Incas controlled their empire and sent messages17
26324500Incashad no written language18
26324501diseases of the Europeansthe main cause for the decline of the native population in Central Mexico19

Aztecs- Arrival of the Spanish; End of MesoAmerica Culture Flashcards

Terms : Hide Images
369624449Columbus arrives in ____?14920
369624450_____ moves to "the new world"Spanish1
369624451______ leads groups of men into Mexico in ____Cortes, 15192
369624452Spanish wanted ______ and _________?slaves, gold3
369624453Other ___ helped Cortes and the AztecsIndians4
369624454Tired of paying taxes to the ____Aztecs5
369624455Aztecs ______ in _____ (what happened after a while)???surrender ,15216
369624456Spanish _____ Aztec citiesdestroyed7
369624457____ became ___ of the SpanishAztecs, slaves8
369624458Aztec ____ was sent to _____gold, Europe9
369624459Aztecs taught _______ and old ___ is lostChristianity, religion10
369624460Spanish had many ____advantages11
369624461the Spanish defeated the Aztecs first? TRUE OR FALSE???True12
369624462The Spanish defeated the Incas in...153313
369624463The Spanish defeated the Mayans in...169714
369624464Spanish was in control of ________MesoAmerica15

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