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AP Biology Chapter 16: DNA and Replication Flashcards

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8310049872DNA replicationThe process by which a DNA molecule is copied; also called DNA synthesis0
8310049873transformation(1) The conversion of a normal animal cell to a cancerous cell. (2) A change in genotype and phenotype due to the assimilation of external DNA by a cell. When the external DNA is from a member of a different species, transformation results in horizontal gene transfer1
8310049874bacteriophageA virus that infects bacteria; also called a phage2
8310049875virusAn infectious particle incapable of replicating outside of a cell, consisting of an RNA or DNA genome surrounded by a protein coat (capsid) and, for some viruses, a membranous envelope3
8310049877double helixThe form of native DNA, referring to its two adjacent antiparallel polynucleotide strands wound around an imaginary axis into a spiral shape.4
8310049878antiparallelReferring to the arrangement of the sugar-phosphate backbones in a DNA double helix (they run in opposite 5' S 3' directions)5
83100498793.4 nm and 10 nucleotideslength between 2 nucleotides and # of nucleotides per turn6
83100498802 hydrogen bondsadenine forms7
83100498813 hydrogen bondsguanine forms8
83100498822 nmdiameter of the double helix9
8310049883semiconservative modelType of DNA replication in which the replicated double helix consists of one old strand, derived from the parental molecule, and one newly made strand10
8310049884conservative modelthe two parental strands somehow come back together after the process11
8310049885dispersive modelall four strands of DNA following replication have a mixture of old and new DNA12
8310049886origin of replicationSite where the replication of a DNA molecule begins, consisting of a specific sequence of nucleotides13
8310049887replication forkA Y-shaped region on a replicating DNA molecule where the parental strands are being unwound and new strands are being synthesized.14
8310049888helicaseAn enzyme that untwists the double helix of DNA at replication forks, separating the two strands and making them available as template strands.15
8310049889single-strand binding proteinA protein that binds to the unpaired DNA strands during DNA replication, stabilizing them and holding them apart while they serve as templates for the synthesis of complementary strands of DNA16
8310049890topoisomeraseA protein that breaks, swivels, and rejoins DNA strands. During DNA replication, ________ helps to relieve strain in the double helix ahead of the replication fork17
8310049891primerA short stretch of RNA with a free 3' end, bound by complementary base pairing to the template strand and elongated with DNA nucleotides during DNA replication18
8310049892primaseAn enzyme that joins RNA nucleotides to make a primer during DNA replication, using the parental DNA strand as a template19
8310049893DNA polymeraseAn enzyme that catalyzes the elongation of new DNA (for example, at a replication fork) by the addition of nucleotides to the 3' end of an existing chain. There are several different ________; ________ III and _______ I play major roles in DNA replication in E. coli.20
8310049895nucleoside triphosphatea nucleoside (a sugar and base) with three phosphate groups. where each added nucleotide comes from21
8310049896leading strandThe new complementary DNA strand synthesized continuously along the template strand toward the replication fork in the mandatory 5' S 3' direction22
8310049897lagging strandA discontinuously synthesized DNA strand that elongates by means of Okazaki fragments, each synthesized in a 5' S 3' direction away from the replication fork23
8310049898okazaki fragmentA short segment of DNA synthesized away from the replication fork on a template strand during DNA replication. Many such segments are joined together to make up the lagging strand of newly synthesized DNA. about 1000-2000 nucleotides in bacteria and 100-200 in eukaryotes24
8310049899sliding clampDNA pol III is closely associated with this. it encircles the newly synthesized double helix like a doughnut. it moves DNA pol III along the DNA template strand25
8310049900overview of lagging strand26
8310049901DNA polymerase IIIadds nucleotides to the primer in the 3' direction27
8310049902DNA polymerase Iin the lagging strand, replaces RNA primer nucleotides with DNA nuceleotides28
8310049903DNA ligaseA linking enzyme essential for DNA replication; catalyzes the covalent bonding of the 3' end of one DNA fragment (such as an Okazaki fragment) to the 5' end of another DNA fragment (such as a growing DNA chain)29
83100499051/10^10 and 1/10^5completed error rate and error rate30
8310049906mismatch repairThe cellular process that uses specific enzymes to remove and replace incorrectly paired nucleotides31
8310049907nucleaseAn enzyme that cuts DNA or RNA, either removing one or a few bases or hydrolyzing the DNA or RNA completely into its component nucleotides32
8310049908nucleotide excision repairA repair system that removes and then correctly replaces a damaged segment (usually DNA pol I) of DNA using the undamaged strand as a guide33
8310049909thymine dimersthe covalent linking of thymine bases that are adjacent on a DNA strand. causes the DNA to buckle and interfere with DNA replication34
8310049910telomeresThe tandemly repetitive DNA at the end of a eukaryotic chromosome's DNA molecule. ________ protect the organism's genes from being eroded during successive rounds of replication. repeating TTAGGG sequence between 100 and 1000 times35
8310049911telomeraseAn enzyme that catalyzes the lengthening of telomeres in eukaryotic germ cells36
8310049912negativecharge of the backbone37
8310049913histonesresponsible for the first level of DNA packing in chromatin38
8310049914H2A, H2B, H3, H4four common types of histone39
8310049915nucleosomethe "bead" on the string. the basic unit of DNA packing. 10 nm in length40
8310049916linker DNAthe DNA between nucleosomes41
8310049923nucleoidA non-membrane-bounded region in a prokaryotic cell where the DNA is concentrated42
8310049924chromatinThe complex of DNA and proteins that makes up eukaryotic chromosomes. When the cell is not dividing, chromatin exists in its dispersed form, as a mass of very long, thin fibers that are not visible with a light microscope43
8310049925heterochromatinEukaryotic chromatin that remains highly compacted during interphase and is generally not transcribed44
8310049926euchromatinThe less condensed form of eukaryotic chromatin that is available for transcription45
8310049927depurinationtype of DNA damage in which a purine base is removed46
8310049928deaminationtype of DNA damage in which an amine group is removed from a molecule47
8310049931phosphodiester bondthe bond between two nucleotides48
8310049932major grooveoccurs where the backbones of DNA are far apart49
8310350968minor grooveoccurs where the backbones of DNA are closer together50

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