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Biochemistry Flashcards

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5984827067carboxyl group pKa20
5984828214amino group pKabetween 9 and 101
5984833541nonpolar, nonaromatic amino acidsglycine, alanine, valine, leucine, isoleucine, methionine, proline2
5984834954aromatic amino acidstryptophan, phenylalanine, tyrosine3
5984837645polar amino acidsserine, threonine, asparagine, glutamine, cysteine4
5984840768negatively charged (acidic) amino acidsaspartate, glutamate5
5984842925positively charged (basic) amino acidslysine, arginine, histidine6
5984844717pKathe pH at which half of the species is deprotonated; [HA] = [A-]7
5984849304pI without charged side chain68
5984854445pI of acidic amino acidswell below 69
5984855402pI of basic amino acidswell above 610
5984857143hydrolysisreaction where peptide bonds are broken11
5984858339primary structurelinear sequence of amino acids in a peptide and is stabilized by peptide bonds12
5984860712secondary structurethe local structure of neighboring amino acids, and is stabilized by hydrogen bonding between amino groups and nonadjacent carboxyl groups13
5984864408alpha-helixclockwise coils around central axis14
5984865661beta-pleated sheetsrippled strands that can be parallel or antiparallel15
5984867315prolinecan interrupt secondary structure because of its rigid cyclic structure16
5984869663tertiary structurethe three-dimensional shape of a single polypeptide chain, and is stabilized by hydrophobic interactions, acid-base interactions (salt bridges), hydrogen bonding, and disulfide bonds17
5984875064disulfide bondsoccur when two cysteine molecules ore oxidized and create a covalent bond to form cystine18
5984878226quarternary structurethe interaction between peptides in proteins that contain multiple subunits19
5984886304oxidoreductasescatalyze oxidation-reduction reactions that involve the transfer of electrons20
5984889533transferasesmove functional group from one molecule to another molecule21
5984890780hydrolasescatalyze cleavage without the addition of water22
5984891683lyasescatalyze cleavage without the addition of water and without the transfer of electrons.23
5984894574synthesisreverse reaction of lyases24
5984896016isomerasescatalyze the interconversion of isomers, including both constitutional isomers and stereoisomers25
5984897905ligasesresponsible for joining two large biomolecules, often of the same type26

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