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1984: Book 2, Chapter 1 Flashcards

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530833978Hwo does Winston react to the note from Julia before he reads it?Winston continues to believe that Julia is a member of the Thought Police. He is nervous and scared because he thinks that note will be from the Thought Police telling him to kill himself or that he will be arrested.
530833979How does Winston react to the note after he reads it?After reading the note, Winston's concern is how to arrange a meeting with her; he believes Julia is genuine in her love for him because he saw the look of fear on her face. He no longer thinks Julia is bad.
530833980How do Winston and Julia manage to meet for the first time?They manage to meet for the first time in the cafeteria at work. They are able to find a table by themselves for a few minutes. Here they make a "date" to meet at Victory Square that night amongst the crowd.
530833981Describe the "parade" in Victory Square. Why does the Inner Party provide the spectacle for the proles? Why for Outer Party Members?The Inner Party puts on this parade of captured enemies to ensure hatred stays strong.
530833982Julia slipped Winston a note. What did the note say?"I love you."
530833983When and where will the couple meet again?They will meet again in a remote location out in the country.
530833984What did Winston and Julia manage to do when in the crowd at Victory Square?They were able to hold hands for 10 seconds.

population ch 9,12, and 5 in wright Flashcards

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259969394agricultural revolution?developed as a result of the industral revolution. Machines were developed taht repalced humans and animal energy with fossil fuel.
259969395ecological cost of agricultural revolution?fossil fuel depletion, air pollution and soil compaction.
259969396what is the Green Revolution?the implementation of technologies deveoloped in the industrialzed world to increase agricultural productivity
259969397Limitations and gains?it was dependent upon the develpoment of crop vareties that would produce more fuel
259969398what is subsistence agriculture?it is farming that is done typically on small pancels of land that provide the farmer and their family with food for the household and possibly a small cash crop. it lacks imput of industrial agriculture and is labor intensive.
259969399what is subsistence agriculture's relationship to sustainability?it is sustainable when the land being cultivated is not being depended on by too many people and when animals are combinded with it as well.
259969400what are our major prospects for increasing food production in the future?it looks good! over past 30yrs grain harvest and meat production have outpaced the population growht. MORE FOOD=MORE PEOPLE.
259969401what are the promiese and problems associated with using biotechnology in food production?1) endangers resistance to disease and pests that attack important tropical plants. 2) produce a tolerance to env. conditions such as drought and hig seasalt levels, that stree most plants. 3) improves the nutritional value of commonly eaten crops (golden rice) 4) imcorporate vaccines against major human diseases into the cells of commonly eaten plants like bananans.
259969402what does the Cantagena protocol state?it states that the lack of scientific uncertainity
259969403what are 3 levels of responsibility for meeting food needs?1) offical policies represented by a variety of welfare measures. (food stamps) 2) voluntary aid through hunger relief organizations. (increase # of ind who prod. food for themselves.) 3) food security at the national level can be imporved, increasing the ability of a country to be food sefl-sufficent. Global Food Security could be improved in problems such as trade inblance and human exploitations were addressed.
259969404how are hunger and poverty related?if you dont have $ you cnt buy foot. The poorest individuals in the world do not have access to land to grow their own food. this means they must buy it but they lack the $ to do so.
259969405How is famine relief accomplished?Food "aide is vital in saving lives where famines occur" food aid is a buffer against famine.
259969406How can food aide sometimes aggravate poverty and hunger?By undercutting the local farming economy and result in more people being dependent upon food aid.
259969407How is the world divided in terms of per capita incomes?High income, high dev ind countires: US west europe japan aust. canada (only 16% or pop lives in these countries but they control 81% wealth)
259969408how is the world divided in terms of fertility rates?they are lower in developed countries
259969409how is the world divided in terms of growth rates?they are higher in non developed countires
259969410what three factors are multiples to give total enviromental impact?population, affluence and technology
259969411Are developed countires exempt from enviromental impact?not exampt sicne increased comsumption levels.
259969412what 4th factor modifies envrionments impact and how does it work?Since attentions conservations and effecting many offset the neg impact of a consumer
259969413what are envrionment impacts (6) of rapid population growth in rural developing countires?1) overcultivation, soil erosion, decreased fertility 2) overfishing 3)poaching, illegal act hunting 4)moving to cites squalor and disease 5)migration, immigrations on pressure to develop countires 6) bring new land into prod by deforestionat irrigationd draining wet lands.

DNA/RNA and Protein Synthesis Flashcards

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474373948RNA & DNA work together as team to make _____ on ______.proteins, ribosomes
474373949Genetic information is encoded in ____.DNA
474373950New DNA is synthesized by complimentary pairing of ______ ________ on two DN strands.nucleotide bases (A <-> T, C <-> G)
474373951Unrepaired mistakes in DNA synthesis result in _____ _______.genetic mutations
474373952RNA is involved in decoding DNA and ______ to ______ ________.translation, produce proteins
4743739532 classifications of nucleic acids1) Deoxyribonucleic acid (DNA) 2) Ribonucleic acid (RNA)
474373954NucleotidesMonomer units of nucleic acids
4743739553 Components of Nucleotides:1) Nitrogenous base (pyrimidines and purines) 2) Sugar (ribose or 2-deoxyribose) 3) Phosphate
474373956base + sugarnucleoside (add a phosphate = nucleotide)
474373957RNA differences (3)- single stranded - composed of ribose sugar - contains the base Uracil (U)
474373958DNA differences (3)- double stranded - composed of deoxyribose sugar - contains base Thymine (T)
474373959DNA basesThymine (T) <-> Adenine (A) Cytosine (C) <-> Guanine (G)
474373960RNA basesUracil (U) <-> Adenine (A) Cytosine (C) <-> Guanine (G)
474373961Pyrimidine Bases- Cytosine - Guanine - Thymine (DNA only) - Uracil (RNA only)
474373962Purine Bases- Adenine - Guanine
474373963Nucleotide formation is a ________ reaction.condensation (2 H2O released) - base attached to 1' position of the sugar - phosphate located at 5' position on the sugar
474373964phosphorylated nucleic acidnucleotide
474373965What is present in RNA in addition to nitrogenous base, sugar and phosphate group?-OH (hydroxyl)
4743739665' end of polynucleotide chainend with no nucleotide attached (end with a free phosphate)
4743739673' end of polynucleotide chainend with free hydroxl (-OH)
474373968Sequences are always read from the ___ to ____ ends.5', 3'
474373969Linkage btwn two nucleotides is a 3' to 5' _______ bond.phosphodiester (phosphodiester linkage -> involves 2 esters)
474373970The "other side" of the DNA strandcomplimentary strand
474373971Complimentary bases are held together with ______ bonds.hydrogen bonds (together with hydrophobic interactions give structure to dsDNA)
474373972antiparallel manner of paired strands means...5' end of one strand is paired with 3' end of other
474373973Hydrophylic deoxyribose-phosphate backbone of each chain is on _____ of helix.outside (exterior surface)
474373974Hydrophobic _____ stacked inside helix.bases
474373975"AT(&T)"Adenine and Thymine bond with TWO hydrogen bonds
474373976Guanine and Cytosine bond with ____ hydrogen bonds.3
474373977Differences btwn RNA & DNA:1) RNA usually single strand 2) RNA can fold back on itself 3) RNA composed of ribose sugar (DNA deoxyribose) 4) RNA contains base of Uracil (in place of Thymine in DNA)
474373978DNA --> DNA = ______replicates (replication)
474373979DNA --> mRNA = ______transcription (occurs in nucleus)
474373980mRNA --> production of proteins =translation (occurs on ribosomes in cytoplasm)
474373981mRNA"blueprint carrier" - from nucleus to ribosomes locates in cytoplasm
474373982Protein synthesis takes place on ______.ribosomes
474373983Available strand for reading (3' to 5') when DNA unravelssense strand
474373984post-translation modificationThis is the chemical modification of a protein after its translation. It is one of the later steps in protein biosynthesis, and thus gene expression, for many proteins. A protein (also called a polypeptide) is a chain of amino acids. During protein synthesis, 20 different amino acids can be incorporated to become a protein. After translation, the posttranslational modification of amino acids extends the range of functions of the protein by attaching it to other biochemical functional groups (such as acetate, phosphate, various lipids and carbohydrates), changing the chemical nature of an amino acid (e.g. citrullination), or making structural changes (e.g. formation of disulfide bridges). Also, enzymes may remove amino acids from the amino end of the protein, or cut the peptide chain in the middle. Also, most nascent polypeptides start with the amino acid methionine because the "start" codon on mRNA also codes for this amino acid. This amino acid is usually taken off during post-translational modification.Other modifications, like phosphorylation, are part of common mechanisms for controlling the behavior of a protein, for instance activating or inactivating an enzyme.
474373985Post-translation Modification of mRNA(mRNA that is synthesized from DNA must undergo several changes) STAGE1: "Add Head & Tail" - 5' capping (w/ methylated cap -> methylguanosine cap) - Poly-A tail at 3' end (poly-adenine tail) [enzyme responsible = polyapolemerase) STAGE 2: Splicing
474373986splicingthe process in which introns are removed from pre-mRNA, exons are binded, and a methylated cap (5' end) and poly-a tail (3' end) is put on to protect--resulting in healthy, functioning, mature mRNA [still occurring in nucleus]
474373987transcription termination sitewhere DNA would stop transcribing specific gene code to RNA ("stop point" --> divides genes)
474373988____ are cut out.Introns
474373989Exons are ____ ____.joined together ("wanted" and taken to cytoplasm)
474373990mRNA is functional and healthy for protein synthesis when _____ are _______.exons, removed
474373991Translation occurring on ribosomes in cytoplasm involves _____ and a _____ ______.tRNA, ribosomal unit (rRNA made up of 40s and 60s ribosome)
474373992Have ~20 tRNAs because each is _____ to only ___ amino acid.specific, 1
474373993Translation is responsible for translating the information in ____.mRNA (translates into the language of the amino acid to form a growing peptide chain)
474373994Protein chains grow one-by-one and cannot grow 2 or more at a time.true
474373995Translation involves ____, _____, _____ and _____.- mRNA - small & large subunits of ribosome - tRNA - release factor
4743739963 Stages of Translation:1) Initiation 2) Elongation 3) Termination
474373997mRNA (methylated cap at 5', _______, poly-A tail)mRNA codons (--> methianine correlates to "AUG" codon --> 2nd codon enters & methianine attaches --> next tRNA enters, with ribosome moving along the mRNA, attaches next amino acid coded for --> elongation continues w/ribosome moving along mRNA --> stop codon initiates release factor and the end of protein synthesis
474373998codon"genetic code" --> composed of mRNA nucleotides
474373999____ mRNA nucleotides code for one amino acid.3
474374000UUUcodes for phenylalanine (1st discovered -> Nobel Prize)
474374001genetic code is redundantmeans amino acid has more than one codon
474374002does not relate/code for an amino acidnonsense code (can signal end of transcription --> "stop code)
474374003When ribosome encounters nonsense ___, ___ or _____ the translation stops.UGA, UAA, UAG
474374004silent mutationcodon with changed base codes for original amino acid ("redundant codon" -> no issues related) [ex. UCA (codon for serine) -> UCU (codon for serine)
474374005missense mutationcodon with changes base codes for amino acid different than original amino acid (altogether diff AA means protein may be unhealthy or misfunctioning) [ex. UCA (serine)-> CCA (codon for proline)]
474374006nonsense mutationcodon with changed base may become "termination" codon ("stop codon" -> no AA from that mRNA) [Ex. UCA (serine) -> UAA (termination codon)]
474374007Huntington disease- nucleotide repeat mutation - CAG codon is amplified (repetition) => encodes Glutamine to point of multiple residues & protein has no function - neurodegenerative disease that is slowly chronic
474374008Cystic Fibrosis- frame-shift mutation (loss of one genetic code altogether on DNA & counting is not right-->whole frame shifts on DNA so that protein is misfolded) - loss of 3 nucleotides in base-cystic fibrosis - loss of Phe in 508th position-->prevents normal folding - this protein typically func. in Chlorine channel in epithelial cells--> misfunction results in: production of thick mucus in lungs, GI tract & pancreas
474374009DNA->transcription-->mRNA->translation-->proteinTTC (on DNA template strand)->AAG (on mRNA)-> Lysine (polypeptide, or "AA sequence) AGT -> UCA -> Serine CAG -> GUC -> Valine
474374010Drug that binds RNA polymerase (the imp enzyme in translating DNA) to the result that there is no translation of DNARifampin (binds only bacterial RNA, not eukaryotic RNA-> i.e., Rifampin is very specific)
474374011Medication to treat cancer (non-specific)5-Flourouracil (an analog of uracil or thymine)--> "arrest the "dUMP --> dTMP" stage and halts DNA synthesis [dUMP--(5-FU -bindsto->F-dUMP)-->(no further process thru to) dTMP-->dTTP-->DNA]
4743740125-Flourouracil occupies ____ _____ (enzyme), which converts uracil to thymine.Thymydilate synthase
474374013Inhibitors of DNA Synthesissulfanomides (folic acid analogs)- inhibit synthesis of folic acid in microbes (bacteria) competitively (by looking like) w/o interfering w/ host cell function
474374014sulfanomides (methotrexate)- analogs of para-amino benzoic acid ("PABA") - interferes w/ folic acid metabolism COMPETIVELY - methotrexate limits the avail of tetrahydrofolate (a coenzyme of folic acid)- more effective at binding dihydrofolate reductase enzyme that is necessary for reaction of folic acid-->tetrahydrofolate-->purine synthesis
474374015Disease related to Nucleotide Metabolism:Gout - increased uric acid - xanthine oxidase enzyme required for reaction inhibited competitively by drug (Allopurinol) [phosphoribosyl pyrophophate (PRPP)->->hypoxanthine->xanthine-(xanthine oxidase)-> uric acid] "when wking properly w/o suicide inhibitor Allipurinol"

Enviromental Science Ch 5 Flashcards

Enviromental Systems and Ecosystem Ecology

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481245660abioticnonliving, physical features of the environment, including air, water, sunlight, soil, temperature, and climate
481245661AquifersAn underground water reservoir. Porous, water- bearing layers of sand, gravel, and rock below the earth's surface; reservoirs for groundwater.
481245662AtmosphereThe thin layer of gases surrounding planet Earth.
481245663Biogeochemical cycles(same as nutrient cycle) any of the various nutrient circuits, which involve both biotic and abiotic components of ecosystems.
481245664BiomassOrganic material that makes up living organisms
481245665biosphereall the parts of the planet (abiotic portions)that are inhabited by living things(biotic); sum of all Earth's ecosystems
481245666Bioticthe living organisms in an ecosystem
481245667Carbon CycleA major nutrient cycle consisting of the routes that carbon atoms take through the nested networks of environmental systems.
481245668Closed SystemA system that is isolated and self contained.
481245669Conservation biologistsscientists who study the loss, protection, & restoration of biodiversity; their particular concern is the fragmentation of habitat into small & isolated patches
481245670Convergent Plate BoundariesArea where tectonic plates collide.
481245671CoreThe innermost part of the Earth, made up mostly of iron, that lies beneath the crust and mantle.
481245672CrustThe lightweight outer layer of the Earth consisting of rock that floats atop the malleable mantle, which in turn surrounds a mostly iron core.
481245673Denitrifying BacteriaBacteria that convert the nitrates in soil or water to gaseous nitrogen and release it back in to the atmosphere.
481245674Divergent Plate BoundariesArea where magma surging upward to the surface divides tectonic plates and pushes them apart, creating new crust as it cools and spreads. (Ex: Mid Atlantic Ridge)
481245675Dynamic EquilibriumThe state reached when processes within a system are moving in opposing directions at equivalent rates so that their effects balance out. (Uses negative feedback)
481245676Ecological modelingThe practice of constructing and testing models that aim to explain and predict how ecological systems function.
481245677Ecosystemcollection of all the organisms that live in a particular place, together with their nonliving environment
481245678Ecosystem servicesAn essential service an ecosystem provides that supports life and make economic activity possible, such as clean air to breathe, clean water to drink, and fertile soil in which to grow crops, and serve as recepticles and recycling systems for the waste generated by our economic activity.
481245679EcotonesA transitional zone where ecosystems meet.
481245680Emergent PropertiesA characteristic that is not evident in a system's components. New properties that emerge with each step upward in the hierarchy of life, owing to the arrangement and interactions of parts as complexity increases. evolution = emergent properties.
481245681EutrophicationThe process of nutrient enrichment, increased production of organic matter, and subsequent ecosystem degradation. Ex. farm runoff (nitrogen & phosphorus) -> rapid algal growth (algal bloom)-> blocks sunlight, causing the death/decomposition of aquatic plants-> decreasing dissolved oxygen (DO)-> suffocating fish.
481245682EvaporationThe conversion of a substance from a liquid to a gaseous form.
481245683Feedback LoopA circular process in which a system's output serves as input to that same system.
481245684FluxThe movement of nutrients among pools or resivoirs in a nutrint cycle.
481245685Gross Primary ProductionThe energy that results when autotrophs convert solar energy to energy of chemical bonds in sugars through photosynthesis. Autotrophs use a portion of this production to power their own metabolism, which entails oxidizing organic compounds by cellular respiration.
481245686GroundwaterWater held in aquifers underground.
481245687Haber-Bosch ProcessA process to synthesize ammonia on an industrial scale. Developed by German chemists Fritz Haber + Carl Bosch, the process has enabled humans to double the natural rate of nitrogen fixation on Earth and thereby increase agricultural productivity, but also altered the nitrogen cycle.
481245688HomeostasisThe tendency of a system to maintain constant or stable internal conditions.
481245689Hydrologic CycleThe flow of water (in liquid, gaseous, and solid forms) through our biotic & abiotic environment.
481245690HydrosphereAll water (salt, fresh, liquid, ice, or vapor) in surface bodies, underground, and in the atmosphere.
481245691HypoxiaThe condition of extremely low dissolved oxygen concentrations in a body of water.
481245692Igneous RockOne of three main categories of rock, formed from cooling magma (such as granite and basalt).
481245693Landscape EcologyAn approach to the study of organisms and their environments at the landscape scale, focusing on geographical areas that include multiple ecosystem.s
481245694LavaMagma that is released from the lithosphere and flows or spatters across Earth's surface.
481245695LithificationThe formation of rock through the processes of compaction, binding, and crystallization.
481245696LithosphereThe solid part of the Earth, including the rocks, sediment, and soil at the surface and extending down many miles underground.
481245697MagmaMolten, liquid rock.
481245698MantleThe malleable layer of rock that lies beneath Earth's crust and surrounds a mostly iron core.
481245699Metamorphic RockFormed by great heat and/or pressure that reshapes crystals within the rock and changes its appearance and physical properties (such as marble & slate).
481245700Negative Feedback LoopA feedback loop in which output of one type acts as input that moves the system in the opposite direction. The input and output essentially neutralize each other's effects, stabilizing the system.
481245701Net Primary ProductionThe energy or biomass that remains in an ecosystem after autotrophs have metabolized enough for their own maintenance through cellular respiration. Net primary production is the energy or biomass available for consumption by heterotrophs.
481245702Net Primary ProductivityThe rate at which net primary production is produced.
481245703NitrificationThe conversion by bacteria of ammonium ions first into nitrate ions and then into nitrate ions.
481245704Nitrogen CycleA major nutrient cycle consisting of the routes that nitrogen atoms take through the nested networks of environmental systems.
481245705Nitrogen FixationThe process by which inert nitrogen gas combines with hydrogen to form ammonium ions.
481245706Nitrogen-Fixing BacteriaTerm describing bacteria that live in a mutualistic relationship with many types of plants and provide nutrients to the plants by converting nitrogen to a usable form.
481245707Nutrient or Biogeochemical CyclesThe comprehensive set of cyclical pathways by which a given nutrient moves through the environment.
481245708nutrientsAn element or compound that organisms consume and require for survival.
481245709Open SystemA system that exchanges energy, matter, and information with other systems.
481245710Phosphorus CycleA major nutrient cycle consisting of the routes that phosphorus atoms take through the nested networks of environmental systems.
481245711Plate TectonicsThe process by which Earth's surface is shaped by the extremely slow movement of tectonic plates, or sections of crust.
481245712Positive Feedback LoopA feedback loop in which output of one type acts as input that moves the system in the same direction. The input and output drive the system further toward one extreme or another.
481245713PrecipitationWater that condenses out of the atmosphere and falls to Earth in droplets or crystals.
481245714ProductivityThe rate at which plants convert solar energy to biomass. Ecosystems whose plants convert solar energy to biomass rapidly are said to have high productivity.
481245715Rock CycleThe very slow process in which rocks and the minerals that make them up are heated, melted, cooled, broken, reassembled, forming igneous, sedimentary, and metamorphic rocks.
481245716RunoffThe water from precipitation that flows intro streams, lakes, ponds, and eventually to the ocean.
481245717Secondary productionThe total biomas that heterotrophs generate by consuming autotrophs.
481245718Sedimentary RockFormed when dissolved minerals seep through sediment layers and act as a kind of glue, crystallizing and binding sediment particles together (such as sandstone and shale).
481245719SedimentsThe eroded remains of rocks
481245720SubductionThe plate tectonic process by which denser ocean crust slides beneath lighter continental crust at a convergent plate boundary.
481245721SystemNetwork of relationships among parts, elements, or components that interact with and influence one another through the exchange of energy, matter, or information.
481245722Transform Plate BoundaryArea where two tectonic plates meet and slip and grind alongside one another. (Ex: Pacific Plate & NA Plate rub against each other along California's San Andreas Fault)
481245723TranspirationThe release of water vapor by plants through their leaves.
481245724Water tableThe upper limit of groundwater held in an aquifer.
481245725Geographic information systems(GIS) a powerful tool that allows the combination of multiple layers of data( from geology, hydrology, vegitation, animal species, and human development) in a computerized environment, creating maps in which patterns and processes are superimposed. Used by geographers, landscape ecologists, resource managers, and conservation biologists.

DNA, RNA and Protein Synthesis Flashcards

Covers DNA Replication and Protein Synthesis terms meant to prepare for a practical lab exam.

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445666775transformationprocess in which one strain of bacteria is changed by a gene or genes from another strain of bacteria
445666776bacteriophagea virus that infects bacteria
445666777nucleotidemonomer of nucleic acids made up of a 5-carbon sugar, a phosphate group, and a nitrogenous base
445666778purinedouble-ring nitrogenous base, found in DNA and RNA; either adenine or guanine
445666779pyrimidinea nitrogenous base that has a single-ring structure; one of the two general categories of nitrogenous bases found in DNA and RNA; thymine, cytosine, or uracil
445666780Rosalind FranklinWoman who generated x-ray images of DNA, she povided Watson and Crick with key data about DNA
445666781Chargaff's Rule[A]=[T] and [G]=[C], they pair up across from one another forming two strands also called base pairing.
445666782Watson & Cricknobel prize winners for correctly describing the structure of DNA as a double helix
445666783base pairingprinciple that bonds in DNA can form only between adenine and thymine and between guanine and cytosine
445666784chromatingranular material visible within the nucleus; consists of DNA tightly coiled around proteins
445666785histoneprotein molecule around which DNA is tightly coiled in chromatin
445666786replicationcopying process by which a cell duplicates its DNA
445666787mRNAtype of RNA that carries instructions from DNA in the nucleus to the ribosome
445666788rRNAtype of RNA that makes up part of the ribosome
445666789tRNAtype of RNA that carries amino acids to the ribosome
445666790transcriptionprocess in which part of the nucleotide sequence of DNA is copied into a complementary sequence in RNA
445666791RNA Polymerasean enzyme that hooks together the RNA nucleotides as they base pair along the DNA template
445666792DNA Polymeraseenzyme involved in DNA replication that joins individual nucleotides to produce a DNA molecule
445666793codonthree-nucleotide sequence on messenger RNA that codes for a single amino acid
445666794anticodongroup of three bases on a tRNA molecule that are complementary to an mRNA codon
445666795translationthe process whereby genetic information coded in messenger RNA directs the formation of a specific amino acid
445666796mutationchange in a DNA sequence that affects genetic information
445666797point mutationa mutation in which only one nucleotide or nitrogenous base in a gene is changed
445666798frameshift mutationmutation that shifts the "reading" frame of the genetic message by inserting or deleting a nucleotide
445666799DNA Helicasean enzyme that unwinds the DNA double helix during DNA replication
445666800Helicasean enzyme that untwists the double helix at the replication forks, separating the two parental strands and making them available as template strands
445666801Single-Strand Binding Proteinafter helicase separates the 2 parental strands, molecules of this then bind to the unpaired DNA strands, stabilizing them until they serve as templates for the synthesis of new complementary strands
445666802DNA Polymeraseelongation of new DNA at a replication fork is catalyzed by an enzyme called ______ _________
445666803DNA Ligasean enzyme that eventually joins the sugar-phosphate backbones of the Okazaki fragments
445666804PrimaseThis enzyme can start an RNA chain from scratch. It removies single-strand binding proteins from the DNA template and joins RNA nucleotides together one at a time, making a primer complementary to the template strand
445666805TopoisomeraseA protein that helps relieve strain in the double helix ahead of the replication fork by breaking, twisting, and rejoining the strand.
445666806AdenineNitrogen base that pairs with thymine
445666807ThymineA Nitrogen base found in DNA (but not in RNA) and derived from pyrimidine
445666808GuanineA Purine base found in DNA and RNA
445666809CytosineThe Purine base that pairs with Guanine with DNA
445666810BacteriophageViruses that infect bacteria
445666811CloningMaking a genetically identical copy of DNA or of an organism
445666812Deoxyribonucleic AcidA double-stranded, helical nucleic acid molecule capable of replicating and determining the inherited structure of a cell's proteins. DNA
445666813DNA LigaseA linking enzyme essential for DNA replication; catalyzes the covalent bonding of the 3' end of a new DNA fragment to the 5' end of a growing chain.
445666814DNA PolymeraseAn enzyme that catalyzes the elongation of new DNA at a replication fork by the addition of nucleotides to the existing chain.
445666815DNA RepairThe removal and replacement of damaged DNA by the correct sequence
445666816DNA Replicationthe process of making a copy of DNA
445666817NucleotideThe building block of a nucleic acid, consisting of a five-carbon sugar covalently bonded to a nitrogenous base and a phosphate group.
445666818X-Ray Diffraction ImageFilm image of x-rays scattered by a crystalline sample the resulting pattern of streaks and dots can be used to calculate the spacing between the atoms in the crystal lattice.
445666819Base SequenceThe order of nitrogenous bases on a chain of DNA.
445666820Alkylating AgentAgent that prevents DNA replication
445666821AnticodonGroup of three bases on a tRNA molecule that are complementary to an mRNA codon
445666822Base-Pair SubstitutionA type of point mutation; the replacement of one nucleotide and its partner in the complementary DNA strand by another pair of nucleotides.
445666823CodonA three-nucleotide sequence that encodes an amino acid or signifies a start signal or a stop signal
445666824Deletion and Insertion of BaseCreates frame shift mutation
445666825ExonPiece of DNA that codes for protiens and is exported from the nucleus.
445666826Frameshift MutationsExtra base inserted into gene region. Insertion shifts the reading of the frame by one base, which DNA polymerases read nucleotide sequences in blocks of 3
445666827Gene MutationA change in the sequence of the bases in a gene, which changes the structure of the polypeptide that the gene codes for.
445666828Genetic CodeThe ordering of nucleotides in DNA molecules that carries the genetic information in living cells
445666829IntronPiece of DNA that doesn't code for protiens, and it stays in the nucleus.
445666830Ionizing RadiationEnough energy to knock electrons from atoms forming ions, (gamma-Xrays-UV)
445666831mRNAmessenger RNA; type of RNA that carries instructions from DNA in the nucleus to the ribosome
445666832Mutation RateProbability of spontaneous mutating
445666833Nonionizing RadiationExcites electrons and causes them to make new covalent bonds, which affects the 3-D structure of Proteins and Nucleic acids
445666834Promoterregion of DNA that indicates to an enzyme where to bind to make RNA
445666835Ribonucleic Acid(RNA) single-stranded nucleic acid that contains the sugar ribose
445666836RNA PolymeraseEnzyme similar to DNA polymerase that binds to DNA and separates the DNA strands during transcription
445666837rRNARibosomal RNA; type of RNA that makes up part of the ribosome
445666838TranscriptionProcess in which part of the nucleotide sequence of DNA is copied into a complementary sequence in RNA
445666839TranslationThe process whereby genetic information coded in messenger RNA directs the formation of a specific protein at a ribosome in the cytoplasm
445666840Transposons(jumping genes) short strands of DNA capable of moving from one location to another within a cell's genetic material
445666841tRNAshort-chain RNA molecules present in the cell that attach the correct amino acid to the protein chain that is being synthesized at the ribosome of the cell
445666842UracilNitrogen base that pairs with adenine in RNA. Replacement of Thymine
445666843The nucleic acids DNA and RNA serve as the blueprints forProteins
445666844DNA nucleotides include the five-carbon sugar known asDeoxyribose
445666845A molecule containing a five-carbon sugar, a phosphate group, and one of four nitrogenous bases A, T, G, or C is known as anucleotide
445666846RNA nucleotides include the five-carbon sugar known asRibose
445666847RNA has three of the DNA nitrogenous bases, but it also hasUracil
445666848In DNA ____ always pairs with _____, and ____always pairs with _____.A with T & G with C
445666849In RNA A always pairs with____.U
445666850__________ bonds hold the double helix togetherhydrogen bonds
445666851Adenine and Thymine have __________ hydrogen bonds connecting them.two
445666852Guanine and Cytosine have ________ hydrogen bonds connecting them.three
445666853. _________ are specific stretches of DNA that program amino acid sequences of proteins.DNA
445666854________ consists of a double strand of polynucleotidesmRNA
445666855. _________ consists of single strand of polynucleotides.RNA
445666856. ___________, a single strand of polynucleotides that is a complimentary copy of a single strand of DNA, leaves the nucleus through a pore in the nuclear membrane and attaches to a ___________ in the cytoplasm where it is used to build ____________, which link together to form proteins.mRNA Ribosome Amino Acids
445666857. The transfer of genetic information from DNA into an RNA molecule is known as _____________.Transcription
445666858The decoding of RNA language into protein language or the information carried by mRNA (messenger RNA) into proteins is known as ____________.Translation
445666859.________________ are based on the nitrogenous bases of the mRNA, which carry the genetic instructions for the amino acid sequence of a polypeptide chain.Triplet Codons
445666860. ___________ carries the anticodons at one end to the ribosome where it bonds to the triplet codons. At the other end of the tRNA is the amino acid based on the triplet codon it corresponds with.tRNA
445666861. __________ is the start triplet codon.AUG
445666862Its anticodon is __________.UAC
445666863. Stop codons are: ______,__________,_________UAA, UAG, UGA
445666864A, C, T, and G are ______________.nitrogenous bases
445666865. During replication, DNA unzips and each original parent strand pairs up with a copy. The parent strand and the copy form a ____________________.daughter strand
445666866When amino acids bond forming the primary structure of a protein (like a beaded necklace), the process is known as ________________________.Protein Synthesis
445666867The bonds that bind amino acids together to form proteins are known as _________________.Peptide bonds
445666868nucleotiderepeating subunits of nucleic acids (DNA & RNA)
445666869deoxyribosethe sugar found in DNA
445666870DNAmolecule that carries the genetic information for all life
445666871RNAnucleic acid that transmits the message from DNA to ribosomes for the making of proteins
445666872ribosethe sugar found in RNA
445666873transcriptionflow of genetic information from DNA to RNA
445666874translationprocess in which RNA directs the making of proteins
445666875codonthree-nucleotide sequence in mRNA that encodes an amino acid for the making of proteins
445666876DNA replicationthe process of making a copy of DNA
445666877double helix"twisted ladder" shape of DNA
445666878helicaseenzyme that separates strands of DNA before DNA replication
445666879DNA polymeraseenzyme that creates new strands of DNA during replication
445666880TranscriptionThe process of making mRNA from DNA in the nucleus.
445666881TranslationThe process of using tRNA and mRNA to put together amino acids at the ribosome.
445666882mRNAMolecule that brings the instructions to make a protein from the nucleus to the ribosome.
445666883tRNAMolecule that brings amino acids to the ribosome during translation.
445666884rRNARibosomes are made of this molecule.
445666885Types of RNAmessenger RNA, transfer RNA and ribosomal RNA
445666886Differences between RNA and DNARNA has ribose, RNA has uracil, RNA not a double helix
445666887anticodon3 bases on tRNA molecules that are complementary to codons
445666888codons3 bases on mRNA that code for an amino acid
445666889Amino acidsThe monomers of proteins
445666890TCCThe complementary DNA strand for the DNA sequence: AGG
445666891AUGThe complementary RNA sequence for the DNA seqeuence: TAC
445666892ThreeThe number of nucleotides that code for each amino acid
445666893RNA polymeraseEnzyme that makes mRNA from DNA during transcription.
445666894nucleusWhere in a eukaryotic cell transcription occurs.
445666895Ribosome or cytoplasmWhere in the cell translation occurs.
445666896AUCThe anticodon for UAG.
445666897PurinesTerm for nucleotide bases with 2 rings.
445666898PyrimidinesTerm for nucleotide bases with 1 ring.
445666899Adenine and guanineThe 2 DNA bases that are purines.
445666900Cytosine and thymineThe 2 DNA bases that are pyrimidines
445666901Adenine and ThymineComplementary bases in DNA that have 2 hydrogen bonds between them.
445666902Guanine and cytosineComplementary bases in DNA that have 3 hydrogen bonds between them.
445666903HydrogenWeak bonds between the 2 DNA strands.
445666904CovalentThe strong bonds between the nucleotides on one strand of DNA.
445666905sugar and phosphateMake up the backbone of DNA or RNA.
445666906DeoxyriboseThe sugar in DNA.
445666907RiboseThe sugar in RNA
445666908HelicaseEnzyme that unwinds and unzips the DNA helix during DNA replication
445666909EnzymesProteins that control chemical reactions in the cell.
445666910HormonesChemical messengers within organisms. Some proteins are these.
445666911HemoglobinProtein that carries oxygen in red blood cells.
445666912Sugar, phosphate and nitrogen base3 parts of a nucletide.
445666913DNA PolymeraseEnzyme that builds the complementary strand in DNA replication
445666914DeoxyriboseThe sugar in DNA nucleotides
445666915RiboseThe sugar in RNA nucleotides
445666916UracilRNA base complementary to Adenine
445666917Before cells divideWhen DNA replication occurs
445666918IntronPieces of mRNa that do not code for the protein. They stay in the nucleus
445666919ExonPieces of mRNA that do code for the protein. These are spliced together and go to the ribosome
445666920SubstitutionReplacing one nucleotide in DNA with another. Only affects one codon
445666921FrameshiftCaused by an insertion or deletion in DNA. affects all codons after the point of mutation
445666922During DNA replicationWhen mutations occur
445666923PhosphodiesterType of covalent bond between the 3' end of one nucleotide and the 5' end of another
445666924topoisomerase...relieves overwinding strain ahead of the replication forks by breaking, swiveling adn rejoining DNA strands
445666925sNRP...Small nucleotide ribonucleoprotein that recognize introns for splicing mRNA
445666926GriffithAccidently discovered transformation by combining a heat killed virulent strain of bacteria with a live non virulent strain
445666927AveryWorked off of Griffith--discovered that DNA was the transforming material by destroying DNA in once experiment and protein in another. Transformation could not happen without DNA
445666928Hershey and ChaseRadioactively labeled protein and DNA to see which enters cells when a virus infects a cell. Discovered it was DNA
445666929Meselson and StahlDetermined that DNA replication is semiconservative
445666930ChargaffDetermined that the amounts of A in a DNA molecule are equal to the amounts of T and the amount of G is equal to the amount of C
445666931FranklinUsed x ray crystallography to determine the helical shape of DNA
445666932Watson and CrickDetermined the structure of the DNA molecule
445666933missense mutationa point mutation where one amino acid is coded for instead of another
445666934nonsense mutationa point mutation that puts a stop codon in the middle of an amino acid sequence
445666935silent mutationa point mutation that results in the same amino acid being coded for
445666936TATA boxthe promoter sequence in eukaryotes
445666937RNA processingputting a 5' guanine cap and a poly A tail on the 3' end prior to the mRNA leaving the nucleus
445666938spliceosomesnRNPs and proteins that cut out introns from mRNA and join the adjacent exons together to make mature mRNA
4456669393' carboncarbon on the sugar in a nucleotide that has an OH group
4456669405' carboncarbon on the sugar in a nucleotide that has a phosphate group
445666941transcription factorsIn eukaryotes, proteins that mediate the binding of RNA polymerase to start transcription
445666942Okazaki fragmentDNA segments made in the lagging strand

Raven - Ch. 15, Genes and How They Work Flashcards

15.1 The Nature of Genes
15.2 The Genetic Code
15.3 Prokaryotic Transcription
15.4 Eukaryotic Transcription
15.5 Eukaryotic pre-mRNA Splicing
15.6 The Structure of tRNA and Ribosomes
15.7 The Process of Translation
15.8 Summarizing Gene Expression
15.9 Mutation: Altered Genes

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332034277Garrod concluded that inherited disorders can involve specific enzymes.Garrod found that alkaptonuria is due to an altered enzyme.
332034278Beadle and Tatum showed that genes specify enzymes.Neurospora mutants unable to synthesize arginine were found to lack specific enzymes. Beadle and Tatum advanced the "one gene/one polypeptide" hypothesis.
332034279The central dogma describes information flow in cells as DNA to RNA to protein.We call the DNA strand copied to mRNA the template (antisense) strand; the other the coding (sense) strand.
332034280Transcription makes an RNA copy of DNA.As per the central dogma, in transcription a DNA template is used to make RNA.
332034281Translation uses information in RNA to synthesize proteins.An adapter molecule, tRNA, is required to connect the information in mRNA into the sequence of amino acids.
332034282RNA has multiple roles in gene expression.There are many kinds of RNA: mRNA, rRNA, tRNA, snRNA, SRP RNA, miRNAs.
332034283The code is read in groups of three.Crick and Brenner showed that the code is non-overlapping and is read in groups of three. This finding established the concept of reading frame.
332034284Nirenberg and others deciphered the code.A codon consists of 3 nucleotides, so there are 64 possible codons. Three codons signal "stop," and one codon signals "start" and also encodes methionine. Thus 61 codons encode the 20 amino acids.
332034285The code is degenerate but specific.Many amino acids have more than one codon, but each codon specifies only a single amino acid.
332034286The code is practically universal, but not quite.In some mitochondrial and protist genomes, a STOP codon is read as an amino acid; otherwise the code is universal.
332034287Prokaryotes have a single RNA polymerase.Prokaryotic RNA polymerase exists in two forms: core polymerase, which can synthesize mRNA; and holoenzyme, core plus σ factor, which can accurately initiate synthesis.
332034288Initiation occurs at promoters.Initiation requires a start site and a promoter. The promoter is upstream of the start site, and binding of RNA polymerase holoenzyme to its -35 region positions the polymerase properly.
332034289Elongation adds successive nucleotides.Transcription proceeds in the 5'-to-3' direction. The transcription bubble contains RNA polymerase, the locally unwound DNA template, and the growing mRNA transcript.
332034290Termination occurs at specific sites.Terminators consist of complementary sequences that form a double- stranded hairpin loop where the polymerase pauses.
332034291Prokaryotic transcription is coupled to translation.Translation begins while mRNAs are still being transcribed.
332034292Eukaryotes have three RNA polymerases.RNA polymerase I transcribes rRNA; polymerase II transcribes mRNA and some snRNAs; polymerase III transcribes tRNA.
332034293Each polymerase has its own promoter.I promotors are species-specific. II promotors are rather complex. Most III promotors are within the genes themselves.
332034294Initiation and termination differ from that in prokaryotes.Unlike prokaryotic promoters, RNA polymerase II promoters require a host of transcription factors. Although termination sites exist, the end of the mRNA is modified after transcription.
332034295Eukaryotic transcripts are modified.After transcription, a methyl-GTP cap is added to the 5' end of the transcript. A poly-A tail is added to the 3' end. Noncoding internal regions are also removed by splicing.
332034296Eukaryotic genes may contain interruptions.Coding DNA (an exon) is interrupted by noncoding introns. These introns are removed by splicing.
332034297The spliceosome is the splicing organelle.snRNPs recognize intron-exon junctions and recruit spliceosomes. The spliceosome ultimately joins the 3' end of the first exon to the 5' end of the next exon.
332034298Splicing can produce multiple transcripts from the same gene.This is due to alternative splicing.
332034299Aminoacyl-tRNA synthetases attach amino acids to tRNA.The tRNA charging reaction attaches the carboxyl terminus of an amino acid to the 3' end of the correct tRNA.
332034300The ribosome has multiple tRNA-binding sites.A charged tRNA first binds to the A site, then moves to the P site where its amino acid is bonded to the peptide chain, and finally, without its amino acid, moves to the E site from which it is released.
332034301The ribosome has both decoding and enzymatic functions.Ribosomes hold tRNAs and mRNA in position for a ribosomal enzyme to form peptide bonds.
332034302Initiation requires accessory factors.In prokaryotes, initiation-complex formation is aided by the ribosome-binding sequence (RBS) of mRNA, complementary to a small subunit. Eukaryotes use the 5' cap for the same function.
332034303Elongation adds successive amino acids.As the ribosome moves along the mRNA, new amino acids from charged tRNAs are added to the growing peptide.
332034304Termination requires accessory factors.Stop codons are recognized by termination factors.
332034305Proteins may be targeted to the ER.In eukaryotes, proteins with a signal sequence in their amino terminus bind to the SRP, and this complex docks on the ER.
332034306Point mutations affect a single site in the DNA.Base substitutions exchange one base for another, and frameshift mutations involve the addition or deletion of a base. Triplet repeat expansion mutations can cause genetic diseases.
332034307Chromosomal mutations change the structure of chromosomes.Chromosomal mutations include additions, deletions, inversions, or translocations.
332034308Mutations are the starting point of evolution.If no changes occurred in genomes over time, then there could be no evolution. Too much change, however, is harmful to the individual with a greatly altered genome. Thus a delicate bal- ance must exist between the amount of new variation that arises in a species and the health of individuals in the species.
332034309Our view of the nature of genes has changed with new information.With additional information, our understanding of how genes work adapts.
332626487Garrod concluded that inherited disorders can involve specific enzymes- discovered that some diseases were the result of recessive alleles and were hereditary - some hereditary diseases appeared to make patients unable to make certain enzymes
332626488Beadle, Tatum, and Neurospora crassa- Neurospora crassa a bread mold - exposed to radiation to damage their DNA - expected mutations that would damage ability to synthesize necessary compounds - placed on minimal media - isolated and identified many nutritional mutants - came up with one-gene/one-polypeptide hypothesis
332626489Nutritional MutationsMutations that affect an organism's ability to synthesize certain nutrients and thus must have them supplemented dietarily.
332626490One-gene/One-polypeptide hypothesisThe hypothesis that one gene codes for one protein. Overly simplistic in actuality.
332626491The Central Dogma (old version)DNA → RNA → protein
332626492TranscriptionThe DNA-to-RNA step in the Central Dogma. Takes place in the nucleus (euks) or cytoplasm (proks).
332626493TranslationThe RNA-to-protein step in the Central Dogma. Takes place in the cytoplasm in the ribosome.
332626494RetrovirusesA class of viruses that can convert their RNA genome into a DNA copy using the viral enzyme reverse transcriptase, thus violating the Central Dogma and forcing a revision.
332626495The Central Dogma (new version)
332626496Template StrandThe strand that is copied during transcription.
332626497Coding StrandThe strand of DNA not used as a template during transcription; it has the same sequence as the RNA transcript (since the template strand has the complementary sequence).
332626498Sense/AntisenseSense = same sequence (but with different bases for RNA/DNA)(the template sequence). The template strand would be the "Antisense" strand.
332626499Messenger RNA mRNA- the RNA transcript used to direct the synthesis of polypeptides - its name reflects its use by the cell to carry the DNA message to the ribosome for processing.
332626500Transfer RNA tRNA- the RNA that is used to "translate" between the language of nucleotides and the language of amino acids during translation - has amino acids covalently attached to one end - has an anticodon that can base-pair with an mRNA on the other end
332626501Ribosomal RNA rRNA- the class of RNA found in ribosomes; critical to its function - multiple forms of rRNA - found in both ribosomal subunits
332626502Small Nuclear RNA snRNA- part of the machinery that is involved in nuclear processing of euk "pre-mRNA"
332626503Signal Recognition Particle SRP RNA- mediates synthesis of proteins by ribosomes on the rough ER - contains both RNA and proteins
332626504Micro-RNA miRNA- short RNAs - relatively new - major class of regulatory molecules
332626505Codons- 3-bp blocks - 20 proteins; 2-bp blocks not enough (4²), need 3 - each corresponds to an amino acid in an encoded protein
332626506Crick, Brenner, and the spacing of codons- Crick+co. used a chemical to create single-base insertions/deletions - either would result in loss of function - same with 2-base alterations - end discovery: 3-base codons, no spacing - importance of reading frame
332626507Reading FrameHow the code is read.
332626508Frameshift MutationsMutations that shift the reading frame.
332626509Determining what codons coded what- Nirenberg artificially synthesized UUU, others - could infer bases, but not order - triple-binding assey allowed them to ID 54/64 - Khorana used organic synthesis to produce artificial RNA molecules of defined sequence, det. the rest
332626510Stop Codons- three codons that signal for protein synthesis to end - UAA, UGA, UAG
332626511Start Codon- a single codon that signals for protein synthesis to start - AUG - also codes for methionine (Met)
332626512Degenerate- some amino acids are specified by more than one codon - HOWEVER, a single codon would never code for more than one amino acid
332626513Degeneracy is not uniform- some animo acids have only one codon, some have up to six - the degenerate base usually occurs at position 3 of a codon
332626514The code is practically universal, but not quite- in mitochondrial genes: the stop codon UGA was read as the AA tryptophan; AUA read as methionine and not isoleucine; and AGA and AGG read as stop codons rather than arginine. - differences also found in chloroplasts, ciliates(proks)
332626515RNA Polymerase- in prokaryotes, exists in two forms: the core polymerase and the holoenzyme - used to synthesize RNA from a DNA polymerase - covers a region of about 74 bp, but only unwinds about 12-14
332626516Core Polymerase- can synthesize RNA using a DNA template, but cannot initiate synthesis accurately - composed of four subunits - two identical α subunits that hold the complex together, can find to regulatory molecules - one β subunit, one β' subunit, that form the active site, bind to the DNA template and ribonucleotide triphosphate precursors
332626517Holoenzyme- can initiate synthesis accurately - contains all subunits of the core polymerase as well as a σ subunit - σ subunit recognizes -35 sequence in promotor and positions the RNA polymerase correctly - unwinds the DNA helix at the -10 site - does not require a primer to work
332626518Promotor- required for the accurate initiate of transcription - a site that forms a recognition and binding site for the RNA polymerase - short sequence upstream of the start site, not transcribed by the polymerase - two 6-base sequences common to bacterial promotors, -35 and -10 - provides the promotor asymmetry, indicating not only the site of initiation but also direction of transcription
332626519Start Site- required for the accurate initiate of transcription - the actual site where transcription starts
332626520Terminator- required for the accurate initiate of transcription - a signal to end transcription
332626521Transcription Unit- the region from promotor to termination
332626522Upstream/Downstream- a method of determining positions of things on the DNA relative to the start site - first base transcribed (downstream) is called +1 - bases upstream have negative numbers; -1
332626523Initiation- occurs at a promotor - DNA unwound with an RNA polymerase - transcription usually starts with ATP or GTP at the 5' end of the chain, which grows as bases are added - σ factor no longer needed after initiation, snaps off
332626524Clearance/Escape- process of leaving the promotor - requires enzyme to change shape for synthesis to be more efficient
332626525Transcription Bubble- region containing the RNA polymerase, DNA template, and growing RNA transcript - within the bubble, first 9 bases of newly synthesized RNA strand temporarily form a helix w/ template DNA - stabilizes positioning of 3' end of RNA so it can interact with incoming base - enzyme covers about 50 bp of DNA around the bubble - moves down the bacterial DNA ~50 nts/sec - transcribed DNA rewound as it leaves the bubble
332626526Termination- marked by terminator sequences - causes the formation of phosphodiester bonds to cease, the RNA-DNA hybrid within the transcription bubble to dissociate, the RNA polymerase to release the DNA, and the DNA within the transcription bubble to rewind - also requires protein factors to aid in termination
332626527Hairpin- found in the simplest terminator, consisting of a series of GC bps followed by a series of AT bps - a double-stranded structure in the GC region - followed by 4+ U rnts - formation of hairpin causes RNA polymerase to pause, placing it directly over the Us, the pairing is weak and so the RNA strand dissociates
332626528Prokaryotic transcription is coupled to translation- mRNA produced by transcription begins to be translated before transcription is finished (coupling) - as soon as a 5' end of the mRNA becomes available, ribosomes are loaded on to begin translation - cannot occur in euks b/c transcription is in nucleus, translation in cytoplasm
332626529Operon- mRNA produced in proks may contain multiple genes - a grouping of functionally related genes - single transcription unit that encodes multiple enzymes necessary for a biochemical pathway - by clustering genes by function, they can be regulated together
332626530How eukaryotic transcription differs from prokaryotic transcription- euks have three RNA polymerases differing in structure, function; proks only have one - in nucleus vs. in cytoplasm - euks use transcription factors - euk termination sites not as well defined as prok terminators - euk mRNA end not formed by RNA polymerase II b/c of post-transcription modification
332626531RNA Polymerase I- found in eykaryotes only - transcribes rRNA
332626532RNA Polymerase II- found in eykaryotes only - transcribes mRNA, some small nuclear RNAs
332626533RNA Polymerase III- found in eykaryotes only - transcribes tRNA, some other small RNAs
332626534Eukaryotic RNA polymerase promotors- three dif polymerases wach need their own promotors - RNA polymerase I promotors specific to each species - RNA polymerase II promotors the most complex, diverse; TATA box a component of most - RNA Polymerase III promotors within the gene itself
332626535TATA Box- a sequence found in RNA polymerase II promotors upstream of the start site - similar to the prok -10 sequence - part of a "core promotor" composed of different elements
332626536Transcription Factors- proteins necessary in transcription function - used by RNA polymerase II to form an initiation complex at the promotor
332626537Primary Transcript- the RNA synthesized by RNA polymerase II - unmodified
332626538Mature mRNA- the final processed form of mRNA - modified with a 5' cap and 3' poly-A tail
3326265395' Cap- first base in a transcript usually A or G - modified with addition of a GTP to the 5' PO₄ group - only 5'-to'5' bond found in nucleic acids - G in GTP modified by addition of methyl group; methyl-G cap - added when transcription is still in progress - protects 5' end of mRMA from degredation - involved in translation initiation
3326265403' Poly-A Tail- euk transcript cleaved downstream of a specific site (AAUAAA) prior to termination site for transcription - series of A residues, the 3' poly-A tail, added after the cleavage by poly-A polymerase - 100-200 A's long - not created by RNA polymerase II - not the end of the transcript - protects mRNAs from degredation
332626541Poly-A PolymerasePart of a complex that recognizes the poly-A site, cleaves the transcript, then adds As to the end.
332626542ColinearWhen the sequence of bases in the genes corresponds to the sequence of amino acids in the protein.
332626543Introns- noncoding DNA that does not appear in mRNA - "intervening sequences" - majority of most eukaryotic sequences - prokaryotes do not have - all begin with same 2-base sequence, end in another 2-base sequence, contain a conserved A nt called the branch point
332626544Exons- coding regions on the DNA - "expressed sequences" - minority of most eukaryotic sequences
332626545Pre-mRNA Splicing- how euks deal with introns - occurs in nucleus prior to export of mRNA to cytoplasm
332626546Spliceosome- comprised of clustered snRNPs and other proteins - responsible for the splicing of introns - recognizes 2-base sequences that tag introns for removal
332626547Small Nuclear Ribonucleoprotein Particles snRNPs- complexes composed of snRNA and protein - "snerps snip"
332626548Splicing Process- occurs during trascription - snRnA forms base-pairs with 5' end, at branch site - associate w/ other factors to form spliceosome - cleavage of the 5' end - becomes attached to a 2' OH of branch point A - forms a branched structure called a lariat (noose) - 3' end of first exon then used to displace 3' end of intron, joining exons and releasing intron as lariat
332626549Distribution of introns- fairly random, no rules govern - exon shuffling hypothesis, that introns the leftovers of functional domains shuffling over time; unsure - possible that introns have no single origin and cannot be explained by a single hypothesis
332626550Alternative Splicing- the inclusion of different sets of exons - important to an organism's function; ~15% of known human genetic disorders from altered splicing - allows for more proteins to be coded per area
334521428Aminoacyl-tRNA Synthetase- an enzyme that attaches an amino acid to the tRNA with the correct anticodon - one enzyme for each of the 20 amino acids - but each recognizes more than one tRNA
334521429Acceptor Stem- one of the functional ends of a transfer RNA - attaches to the amino acid - at the 3' end of the tRNA; always ends in 5' CCA 3'.
334521430Anticodon Loop- one of the functional ends of a transfer RNA - complementary to the codon - middle "leaf" in tRNA clover
334521431Transfer RNA- a bifunctional molecule able to interact with both mRNA and amino acids - structure is highly conserved in all living systems - forms a cloverleaf structure based on intramolecular base-pairing that produces dbl-stranded regions - primary structure folded in space to form an L-shaped molecule w/ two functional ends: acceptor stem and anticodon loop
334521432Charging Reaction- the reaction catalyzed by the enzymes that adds amino acids to tRNAs - joins the acceptor stem to the C-terminus of the amino acid
334521433Ribosomes cannot "proofread" the amino acids attached to tRNA- they only ensure the codon/anticodon pairing is correct - takes the attached amino acid for granted - thus, it is vital that the charging reaction is done correctly
334521434Terminology for tRNAs[what the tRNA is charged with]-tRNA^[what the tRNA is supposed to be charged with] ex. X-tRNA^X = supposed to be charged with X amino acid, is charged with X amino acid tRNA^Y = supposed to be charged with Y, not charged yet Y-tRNA^X = supposed to be charged with X, actually charged with Y
334521435The bacterial ribosome has 3 binding sites- the P site (peptidyl) binrds to the tRNA attached to the growing peptide chain - the A site (aminoacyl) binds to the tRNA carrying the next amino acid to be added - the E site (exit) binds to the tRNA carrying the next amino acid to be added - 5'-E-A-P-3'
334521436The process of the charging reaction- amino acid reacts with ATP, uses resulting AMP to bind to aminoacyl-tRNA synthetase - tRNA then binds to the enzyme - amino acid transferred to the tRNA, producing a charged tRNA molecule and an AMP
334521437Peptidyl Transferase- resides in the ribosome's large subunit - necessary for peptide bond formation - is an rRNA
334521438The ribosome bas both decoding and enzymatic functions- decodes the transcribed message - forms peptide bonds - transcribing function mainly from small subunit of ribosome - peptide bond formation requires peptidyl transferase from the large subunit
334521439Ribosomes are rRNAs held in place by proteins- comprised of two subunits, one large, one small - faces of subunits lined with rRNA which do the majority of interaction with mRNA, tRNA, and amino acids
334521440The overall process of translation- mRNA is threaded through a ribosome - tRNAs carrying amino acids bind to the ribosome - tRNAs and mRNAs interact codon-to-anticodon - ribosome and tRNAs position amino acids to form peptide bonds and a growing polypeptide
334521441Translation initiation requires accessory factors, initiation complex- start codon is AUG/Met; ribosome usually uses the first it meets to signal translation start - in prokaryotes, initiation complex includes tRNA^fMet, small ribosomal subunit, mRNA strand - small subunit fits onto mRNA due to help from RBSes - after complex of mRNA, initiator tRNA, and small ribosomal subunit, large subunit is added - initiator tRNA bound to P site with A site empty - translation can thus begin
334521442RBS- ribosome-binding sequence - on prokaryotes' initiation complex - helps to position the small subunit onto the mRNA - conserved - on the 5' end of the mRNA - complementary to the 3' end of a small subunit rRNA
334521443Initiation Complex- in prokaryotes, initiation complex includes special initiator tRNA molecule charged with a chemically modified Met; tRNA = tRNA^fMet - initiation complex also includes small ribosomal subunit, mRNA strand - small subunit fits onto mRNA due to help from RBSes
334521444Eukaryotic Initiation- differs from proks in 2 ways - initiating amino acid is Met, not fMet - initiation complex much more complicated, has nine or more protein factors, many of several subunits - euk mRNAs also lack an RBS; small subunit binds to mRNA initially by binding to the 5' cap instead
334521445Elongation adds successive amino acids- with initiation started, second charged tRNA can be brought to the ribosome, bound to the A site - requires elongation factor called EF-Tu; binds to charged tRNA, GTP - peptide bond forms btw amino acid of initiator tRNA and the newly arrived charged tRNA - btw N end of A-site and C end of P-site amino acid
334521446Elongation Cycle- matching tRNA anticodon w/ mRNA codon - each newly charged tRNA has EF-Tu, GTP - after binding, GTP hydrolyzed and EF-Tu-GDP dissociates; step thought to incr. accuracy of translat - peptidyl transferase located in large subunit catalyzes formation of a peptide bond - P-site tRNA left uncharged - ribosome moves relative to mRNA and tRNAs; codons moved along; uncharged tRNA ejected
334521447Translocation- moving the mRNA along so that the tRNAs will be in the right sites - takes a GTP as energy - not the ribosome moving, but the mRNA being pulled through the ribosome and along
334521448Wobble Pairing- fewer tRNAs than codons b/x pairings btw 3' base of codon and 5' base of anticodon less stringent than normal - in some tRNAs, presence of modified bases with less accurate pairing in 5' of anticodon enhances flexibility - effect called "wobble pairin" b/c the tRNAs can "wobble" on the mRNA, a single tRNA can "read" more than one codon in the mRNA
334521449Termination requires accessory factors- elongation continues until chain-terminating stop codon is reached - stop codons do not bind to a tRNA; instead, bind to release factors, w/ no charging - confused, the peptidyl transferase hands off the polypeptide chain to nothing, which releases it - with nothing else, ribosome dissembles
334521450In euks, translation can occur where?- in the cytoplasm or on the RER - proteins translated on the RER are targeted there based on their own initial amino acid sequence - ribosomes found on RER are actively translating and not permanently bound to RER
334521451Signal Sequence- a short short sequence - polypeptide that begins with signal sequence specifically recognized and bound by cytoplasmic complex of proteins called the signal recognition particle - this complex is in turn recognized by receptor protein in ER membrane - process of binding of the two called docking - ribosome not actually bound to ER itself, but the newly synthesized protein entering the ER ties it to
334521452Once within the ER cisternal space, or lumen, the newly synthesized protein...... can be modified by addition of sugars (glycosylation) and transported by vesicles to the Golgi apparatus - beginning of protein-trafficking pathway
334521453Base Substitution Mutation- the substitution of one base pair for another in DNA - may be silent
334521454Missense Mutation- when a base sequence mutation changes an amino acid in a protein - falls into two categories: transitions, transversions - transitions do not change the type of bases in base pair, i.e. pyrimidine for pyrimidine - transversions does change type of base pairs
334521455Nonsense Mutation- a base substitution mutation that changes the codon to a stop codon
334521456Frameshift Mutations- a change in the reading frame - affects pretty much everything after the mutation
334521457Triple Repeat Expansion Mutations- a mutation where a triplet sequence of DNA is repeated and the repeat is expanded in the disease allele relative to the normal allele - can occur in exons or introns
334521458Chromosomal Mutations- mutations that are not just point, but can alter the structure of the chromosome itself - consist of deletions, duplications, inversions, translocatons
334521459Chromosomal Mutations Deletion- the loss of a portion of a chromosome - frameshifts can be caused by one or more small deletions, but if larger, whole regions of the chromosome may also be lost
334521460Chromosomal Mutations Duplications- duplication of the region of a chromosome may or may not lead to phenotypic consequences - effects depend on location of the "breakpoints" where the duplication occurred; if not within a gene, may have no effect - if duplication occurs next to original region, termed a tandem duplication - important in the evolution of families of related genes
334521461Chromosomal Mutations Inversions- when a segment of chromosome is broken in 2 places, reversed, put back together - may have no effect if not within a gene
334521462Chromosomal Mutations Translocations- when a piece of a chromosome is broken off and joined to another chromosome - can change the expression of genes in the region involved

Chapter 11: Sleep and Waking Flashcards

sleeping cycles, sleep disorders, bichemistry of sleep

Terms : Hide Images
503117041circadianbiologic clock in humans; the rhythmic repetition of certain phenomena, such as hunger, fatigue, and changes in blood pressure, that tend to fluctuate within a 24-hour period
503117042Zeitgeberthe environmental agent that resets the biological clock e.g: change in light, temperature
503117043Free-running circadian rhythmnatural wake-sleep cycle that is longer than 24 hours
503117044Suprachiasmatic Nucleus SCN"Master clock" Area of the hypothalamus, located just above the optic chiasm, that constitutes the biological clock
503117045Retinohypothalamicconduct information about light-dark cycles to the circadian clock in the SCN pathway from retina to hypothalamus
503117046Melatoninhormone released by the pineal gland in response to daily cycles of light and dark
503117047CortisolSecreted by the adrenal cortex; increases blood sugar. It is secreted in times of stress and has an anti-inflammatory effect also produced when person is stressed
503117048Seasonal affective DisorderControversial disorder in which a person experiences depression during winter months and improved mood during spring. Can be treated using phototherapy, using bright light and high levels of negative ions.
503117049UltradianReferring to a rhythmic biological event whose period is shorter than that of a circadian rhythm, usually from several minutes to several hours long.
503117050slow-wave sleepconsists of sleep stages 3 and 4, during which high amplitude, low frequency delta waves become prominent in EEG recordings
503117051Rapid eye movementstage of sleep in which the eyes move rapidly under the eyelids and the person is typically experiencing a dream
503117052REM Sleeprapid eye movement sleep, a recurring sleep stage during which vivid dreams commonly occur. Also known as paradoxical sleep, because the muscles are relaxed (except for minor twitches) but other body systems are active.
503117053Lucid DreamingThe theory that conscious awareness of dreaming is a learnable skill that enables dreamers to control the direction and content of their dreams.
503117054Night Terroran NREM episode in which the individual is partially aroused, disoriented, frightened, and inconsolable
503117055Growth HormoneA hormone released by the anterior pituitary that targets all cells in the body. Growth hormone stimulates whole body growth in children and adolescents, adn increases cell turnover rate in adults.
503117056REM Reboundthe tendency for REM sleep to increase following REM sleep deprivation (created by repeated awakening during REM sleep)
503117057cerveau isolesurgical experiment that cut the brain of a cat in half above the cerebellum; made cat comatose
503117058Basal Forebrainforebrain area anterior and dorsal to the hypothalamus; includes cell clusters that promote wakefulness and other cell clusters that promote sleep
503117059Raphe Nucleinuclei located in the pons that participate in the regulation of sleep and arousal
503117060reticular formationa network of cells in the brainstem that filters sensory information and is involved in arousal and alertness
503117061locus coeruleusIn hindbrain. Small nucleas in reticular formation involved in ATTENTION (major seat of noradrenergic system), sleep and mood.
503117062PGO Wavethis initiates REM by releasing increasing amounts of ACh
503117063Dyssomniaa sleep disorder that involves difficulty initiating or maintaining sleep
503117064Maintenance Insomniaoccurs when sleep is frequently interrupted or early waking occurs. Frequent waking can result from stress, substance use, or psychopathology
503117065Sleep Apneaa sleep disorder characterized by temporary cessations of breathing during sleep and repeated momentary awakenings
503117066Narcolepsya sleep disorder characterized by uncontrollable sleep attacks. the sufferer may lapse directly into REM sleep, often at inopportune times
503117067CataplexyEpisodes of sudden bilateral loss of muscle tone resulting in the individual collapsing, often in association with intense emotions such as laughter, anger, fear, or surprise.
503117068Sleep ParalysisA temporary condition in which a person is unable to move upon awakening in the morning or during the night.
503117069hypnogogic hallucinationA vivid dream like sensation that is heard, seen, or felt and that occurs near the onset of sleep
503117070hypnopompic hallucinationfalse perception occuring whicle awakeinging form sleep; generally considered non-pathological
503117071SIDSsudden infant death syndrome, or crib death; cause unknown. Associated failure of synapse of nerves to activate the diaphragm
503117072nocturnal enuresisbed wetting during sleep, bed wetting during sleep
503117073REM behavior disordera sleep disorder in which a person does not lose muscle tone during REM sleep, allowing the person to act out dreams
503117074parasomniaa cluster or pattern of waking behavior that appears during sleep, such as somnambulism (sleepwalking), sleeptalking, and enuresis (bedwetting)
503117075insomniasleep abnormalities, including difficulty in falling asleep and wakefulness through the night

Biological Rhythms and Sleep Flashcards

Biological Rhythms and Sleep

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528873955What is a "Circadian Rhythm"?A pattern of behavioral, biochemical, or physiological fluctuation that has a 24-hour period.
528873956What is a "Ultradian Rhythm"?A Rhythmic biological event who's period is shorter than that of a circadian rhythm, usually from several minutes to several hours Examples: Bouts of activity, feeding, and hormone release
528873957What is a "Infradian Rhythm"?A rhythmic biological event whose period is longer than that of a circadian rhythm, that is, longer than a day Examples: body weight and reproductive cycles repeat less than once a day
528873958What are the three types of biological rhythms?Circadian rhythms Ultradian rhythms Infradian rhythms
528873959what does "diurnal"? mean?Active during the light periods of the daily cycle (opposite of nocturnal)
528873960.a Concerning circadian rhythms, What is "free-running"? About how long is the "period"?...
528873961.b Concerning circadian rhythms, What is a "phase Shift"? What is "entrainment"? What is Zeitgeber"?...
528873962.c Where is the biological clock located?...
528873963.d What is some evidence that the SCN produces a circadian rhythm?(1) SCN-lesioned animals showed disrupted circadian rhythms (2) Isolates SCN cells maintain electrical activity synchronized to the previous light cycle (3) Transplant studies: Hamsters with SCN lesions received a SCN tissue transplant from hamsters with a very short period, ~20 hours Circadian rhythms were restored but matched the shorter period of the donor
528873964What do we mean when scientists refere to the "third eye"?The pineal gland in amphibians and birds is sensitive to light. Because the skull over the pineal is especially thin in some species, we can think of those species as having a primitive "third eye"
528873965What is secreted from the pineal gland?Melatonin. An amine hormone that is secreted at night, thereby signaling day length to the brain
528873966What cells in mammals tell tell the SCN when it is light out?Certain retinal ganglion cells in the eye send there axons along the retinohypthalamic pathway, veering out of the optic chiasm to synapse directly within the SCN. Most contain "melanopsin", a special photopigment, that makes them sensitive to light
528873967.e Describe the mechanisms of the molecular clock. How did we discover this?Molecular studies on Drosophila using mutations of the period gene helped to understand the circadian clock in mammals
528873968.f Concerning circadian rhythms, What do tau mutations effect? If both copies of the clock gene are disrupted, what is the effect?...
528873969.g Concerning circadian rhythms, In the absence of cues, what is the free-running period of humans?...
530516493.a What is used to record the sleep patterns? What are the two stages of sleep?...
530516494.b What are the four distinct stages of slow-wave-sleep (SWS)?...
530516495Concerning EEG activity, What is "beta activity"?The pattern of EEG activity in the brain of fully awake, alert person. It i a mixture of many relatively fast frequencies (15-20 Hz) and low amplitude.
530516496Concerning EEG activity, What is "alpha rhythm"?When you relax and close your eyes, a distinctive rhythm appears in the eEG, consisting of a regular oscillation at a frequency of 8-12 Hz
530516497.c Concerning the four stages of slow-wave sleep: What does stage 1 sleep look like? How long does it last?...
530516498.d Concerning the four stages of slow-wave sleep: What does stage 2 sleep look like?If awakened during these first two stages of sleep, many subjects deny that they have been asleep, even though they failed to respond to signals while in those stages
530516499.e Concerning the four stages of slow-wave sleep: What does stage early stage 3 sleep look like?...
530516500.f Concerning the four stages of slow-wave sleep: What does late stage 3 sleep look like?...
530516501.f Concerning the four stages of slow-wave sleep: What does REM sleep look like? What is another name for REM sleep?...
530516502Could a student that fell asleep in class be in REM sleep?Aside from those muscles moving the eyes, all other skeletal muscles are not just relaxed, but completely limp. The active-looking EEG coupled with deeply relaxed muscles is typical of REM sleep. If you see a cat sleeping in the sitting, sphinx position, it cannot be in REM sleep; in REM, it would be sprawled limply on the floor. For the same reason, a student sleeping while sitting upright in class cannot be in REM sleep.
530516503.g What are the properties of Slow-wave sleep versus REM sleep?...
530516504.h About what percent of a typical night of young adult sleep is REM sleep, when does it occur and how long does it's cycles last? How much is stage 2 sleep? Is stage 3 SWS more common early in the night or later in the night?...
530516505.i Does the circadian rhythm of sleep shift? or is it constant?...
530516506In what stages do we dream? How does the stage effect dreaming?Viv dream occur during REM sleep REM sleep is characterized by visual imagery, whereas dreams during non-REM sleep are more "thinking" type. REM dreams are apt to include a story that involve odd perceptions and the sense that the dramer "is there"
530516507What are "night terrors"? How are they different form nightmares?Nightmares are frightening dreams that waken the sleeper from REM sleep Night terrors are sudden arousals from stage 3 SWS, marked by fear and autonomic activity In night terror the sleeper does not recall a vivid dream but may remember a sense of a crushing feeling on the chest, as though being suffocated
530516508.j Do other animals show REM sleep?REM sleep evolved in some vertebrates: Nearly al mammals display both REM and SWS Birds also display both REM and SES sleep
530516509.k How does infant sleep different than children or adults?...
530516510.l How does sleep change as you ageThis decline in stage 3 sleep with age may be related to diminishing cognitive functioning, since an especially marked reduction of stage 3 SWS characterizes the sleep of pople who suffer from senile dementia. growth hormone from disrupted sleep in the elderly leads to the cognitive deficits.
530516511what are the effects of sleep deprivation?...
530516512.m how to the stages of sleep differ in sleep recovery?...
530516513.n What is "fatal familial insomnia"?...
530516514What are the four functions of sleep?(1) Energy conservation - lower muscular tension, heart reate, blood pressure, temperature, and rate of respiration are reduced (2) Niche adaptation - helps avoid predators by sleeping during the part of the day when they are most vulnerable (3) Body restoration -replenishing metabolic requirements, such as proteins, most growth hormone is only released during SWS. Proper sleep is essential for immune function (4) Memory consolidation - Sleep during the interval between learning and recall may reduce interfering stimuli. Memory typically decays and sleep may slow this down.
532170046.e What are the four interacting neural systems and underlie sleep?forebrain system--displays SWS brainstem system--activates the forbrain pontine system--triggers REM sleep hypothalamic system--affects the other three
532170047.b Concerning sleep, What is the isolated brain experiment? What did it discover?...
532170048.b Concerning sleep, What is the isolated forebrain experiment? What did it discover?...
532170049.c What area generates SWS activity in the forebrain? What neurotransmitter is involved?...
532170050.cc What is the Tuberomamillary nucleus?A region of the basal hypothalamus, near the pituitary stalk, that plays a role in generating slow-wave sleep
532170051.ccc What do the general anesthetics used to render people unconscious affect?...
532170052.d What are of the CNS will wake up sleeping animals?...
532170053.f What area of the CNS is responsible for REM sleep?...
532170054.g What neurons inhibit motoneurons during REM sleep? What neurotransmitter is used?neurons in the locus coeruleus GABA and glycine produce powerful inhibitory postsynaptic potentials in spinal motoneurons, preventing them from reaching threshold and producing an action potential. Thus, the dreamer's muscles are not just relaxed, but flaccid.
532170055What is "cataplexy"?Sudden loss of muscle tone, leading to collapse of the body without loss of consciousness. Cataplexy is sometimes a common component of narcoleptic attacks. Can be triggered by sudden, intense emotional stimuli, including both laughter and anger.
532170056What are the symptoms of narcolepsy?involve frequent(usually about every 90 minutes), intense episodes of sleep, which last form 5 to 30 minutes and can occur anytime during the usual waking hours Do not go through SWS before REM sleep
532170057.h How did we learn about the hypothalamic sleep center?Through the study of narcolepsy
532170058.i What in the hypothalamus controls sleepHypocretin (also known as Orexin) neurons Humans with narcolepsy have lost about 90% of their hypocretin neurons
532170059What is "sleep paralysis"?The brief inability to move just before falling asleep, or just after waking up it may be caused by the pontine center continuing to signal for muscle relaxation, even when awake
532170060What sleep disorders in children are associated with SWS?Night terrors and sleep enuresis (bed-wetting) are associated with SWS Somnambulism (sleepwalking) occurs during stage 3 SWS, and may persist into adulthood.
532170061What is REM behavior disorder (RBD)?A sleep disorder in which a person physically acts out a dream It usually begins after age 50 and may be followed by beginning symptoms of Parkinson's disease This suggest damage to the brain motor system
532170062What is Sleep-onset insomnia?difficulty in falling asleep, and can be caused by situational factors, such as shift work or jet lag
532170063What is sleep-maintenance insomnia?difficulty in staying asleep and may be caused by drugs or neurological factors
532170064What is sleep apnea and what causes it?A sleep disorder in which respiration slows or stops periodically, waking the patient. May be caused from respiratory neurons in the brain stem that don't signal properly or by self--choking which is common in obese people Sleep apnea may be accompanied by snoring
532170065What is the speculated cause of SIDS?probably is sleep apnea resulting from immature respiratory pacemaker systems or arousal mechanisms
532170066What is Sleep state misperception?occurs when people report insomnia even when they were alseep
532170067.j How do most sleeping pills work? What occurs from continued use of sleeping pills?...

history - unit 1: monroe doctrine/mexican war Flashcards

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116717665Whose ideas were those of the Monroe Doctrine?John Quincy Adams
116717666Why is it called the Monroe Doctrine?Monroe presented it through his state of the union speech
116717667What did the Monroe Doctrine state?The US would not interfere with existing colonies but would not allow the establishment of any new colonies particularly Britain in Cuba. We would resist militarily.
116717668What problems did we have with Mexico?They were unable to come to an agreement over the location of the border between Texas and Mexico. In order to avoid war and gain the territories, President Polk sent John Slidell, a Spanish-speaking ambassador, to Mexico to negotiate a deal that sells Texas, California and New Mexico to the U.S. for $25 million. Mexico rejected.
116717669What did Polk decide to about our problems with Mexico?Polk was angered and decided to wage war on Mexico. As a result, Polk sent Taylor out to Mexico along with soldiers to stay in disputed territory. The Mexicans thought we were attacking them and killed or injured 16 of our soldiers.
116717670How did Polk get Congress to declare war?He convinced them that since American blood was shed, they should start the war.
116717671How did the war end? Who won?We won. They retreated. We brutally beat them.
116717672What did the Treaty of Hidalgo do and what was it?It was a treaty we signed after we won. It basically stated that they would hand over California, New Mexico, Wyoming, Utah, Texas, Colorado and most of Arizona. In return, we felt bad so paid them $15 million. We also promised to protect the Mexicans still living in Texas.

American Pageant 14th Edition Chapters 13-15 Flashcards

APUSH Unit 5 Key Terms/Important People

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535214689American Temperance SocietyFounded in Boston in 1826 as part of a growing effort of nineteenth century reformers to limit alcohol consumption.
535214690Brook FarmTranscendentalist commune founded by a group of intellectuals, who emphasized living plainly while pursuing the life of the mind. The community fell into debt and dissolved when their communal home burned to the ground in 1846.
535214691Burned over districtPopular name for Western New York, a region particularly swept up in the religious fervor of the Second Great Awakening.
535214692DeismEighteenth century religious doctrine that emphasized reasoned moral behavior and the scientific pursuit of knowledge. Most deists rejected biblical inerrancy and the divinity of Christ, but they did believe that a Supreme Being created the universe.
535214693Hudson River SchoolAmerican artistic movement that produced romantic renditions of local landscapes.
535214694Maine Law of 1851Prohibited the manufacture and sale of alcohol. A dozen other states followed Maine's lead, though most statutes proved ineffective and were repealed within a decade.
535214695minstrel showsVariety shows performed by white actors in black-face. First popularized in the mid-nineteenth century.
535214696MormonsReligious followers of Joseph Smith, who founded a communal, oligarchic religious order in the 1830s, officially known as the Church of Jesus Christ of Latter-Day Saints. Mormons, facing deep hostility from their non-Mormon neighbors, eventually migrated west and established a flourishing settlement in the Utah desert.
535214697New HarmonyCommunal society of around one thousand members, established in New Harmony, Indiana by Robert Owen. The community attracted a hodgepodge of individuals, from scholars to crooks, and fell apart due to infighting and confusion after just two years.
535214698Oneida CommunityOne of the more radical utopian communities established in the nineteenth century, it advocated "free love", birth control and eugenics. Utopian communities reflected the reformist spirit of the age.
535214699Second Great AwakeningReligious revival characterized by emotional mass "camp meetings" and widespread conversion. Brought about a democratization of religion as a multiplicity of denominations vied for members.
535214700ShakersCalled "Shakers" for their lively dance worship, they emphasized simple, communal living and were all expected to practice celibacy. First transplanted to America from England by Mother Ann Lee, the Shakers counted six thousand members by 1840, though by the 1940s the movement had largely died out.
535214701The Age of ReasonThomas Paine's anticlerical treatise that accused churches of seeking to acquire "power and profit" and to "enslave mankind".
535214702"The American Scholar"Ralph Waldo Emerson's address at Harvard College, in which he declared an intellectual independence from Europe, urging American scholars to develop their own traditions.
535214703TranscendentalismLiterary and intellectual movement that emphasized individualism and self-reliance, predicated upon a belief that each person possesses an "inner-light" that can point the way to truth and direct contact with God.
535214704Women's Rights ConventionGathering of feminist activists in Seneca Falls, New York, where Elizabeth Cady Stanton read her "Declaration of Sentiments," stating that "all men and women are created equal".
535214705Charles Grandison FinneyAmerican lawyer, president of Oberlin College, and a central figure in the religious revival movement of the early 19th century; he is sometimes called the first of the professional evangelists.
535214706Joseph SmithReligious leader who founded the Mormon Church in 1830
535214707Brigham YoungThe successor to the Mormons after the death of Joseph Smith. He was responsible for the survival of the sect and its establishment in Utah, thereby populating the would-be state.
535214708Horace MannSecretary of the Massachusetts Board of Education, he was a prominent proponent of public school reform, and set the standard for public schools throughout the nation. He advocated for longer school terms, higher pay for teachers, and an expanded curriculum.
535214709Dorothea DixAmerican educator, social reformer, and humanitarian whose devotion to the welfare of the mentally ill led to widespread reforms in the United States and abroad.
535214710Neal S. DowAmerican politician and temperance advocate whose Maine Law of 1851 presaged national prohibition in the United States.
535214711Lucretia Mottpioneer reformer who, with Elizabeth Cady Stanton, founded the organized women's rights movement in the United States.
535214712Elizabeth Cady StantonNew York, N.Y.), American leader in the women's rights movement who in 1848 formulated the first organized demand for woman suffrage in the United States.
535214713Susan B. Anthonypioneer crusader for the woman suffrage movement in the United States and president (1892-1900) of the National American Woman Suffrage Association. Her work helped pave the way for the Nineteenth Amendment (1920) to the Constitution, giving women the right to vote.
535214714Lucy StoneAmerican pioneer in the women's rights movement; 1st woman to keep maiden name after marriage
535214715John J. AudubonFrench-descended ornithologist who illustrated "Birds of America"; the society for the protection of birds was named after him
535214716James Fenimore Cooperfirst major U.S. novelist, author of the novels of frontier adventure known as the Leatherstocking Tales, featuring the wilderness scout called Natty Bumppo, or Hawkeye. They include The Pioneers , The Last of the Mohicans, The Prairie, The Pathfinder, and The Deerslayer.
535214717Ralph Waldo EmersonAmerican lecturer, poet, and essayist, the leading exponent of New England Transcendentalism.
535214718Henry David ThoreauAmerican essayist, poet, and practical philosopher, renowned for having lived the doctrines of Transcendentalism as recorded in his masterwork, Walden (1854), and for having been a vigorous advocate of civil liberties, as evidenced in the essay "Civil Disobedience" (1849).
535214719Walt WhitmanAmerican poet, journalist, and essayist whose verse collection Leaves of Grass is a landmark in the history of American literature.
535214720Henry LongfellowUnited States poet remembered for his long narrative poems
535214721Louisa May AlcottAmerican author known for her children's books, especially the classic Little Women.
535214722Emily DickinsonAmerican lyric poet who lived in seclusion and commanded a singular brilliance of style and integrity of vision. With Walt Whitman, Dickinson is widely considered to be one of the two leading 19th-century American poets.
535214723Herman MelvilleAmerican novelist, short-story writer, and poet, best known for his novels of the sea, including his masterpiece, Moby Dick (1851). In addition, he rejected the optimism of the transcendentalists and felt that man faced a tragic destiny.
535214724Francis ParkmanAmerican historian noted for his classic seven-volume history of France and England in North America, covering the colonial period from the beginnings to 1763.
535214725Oberlin Collegefirst American institution of higher learning to regularly admit female and black students
535214726Industrial Revolutionthe shift, beginning in England during the 18th century, from making goods by hand to making them by machine
535214727"Self Reliance" (1841)Ralph Waldo Emmerson's popular lecture-essay that reflected the spirit of individualism pervasive in American popular culture during the 1830's.
535214728Limited Liabilitylegal principle that facilitates capital investment by offering protection for individual investors, who, in cases of legal claims for bankruptcy, cannot be held responsible for more than the value of there individual shares.
535214729RendezvousThe principal marketplace of the Northwest fur trade, which peaked in the 1820s and 1830s. Each summer, traders set up camps in the Rocky Mountains to exchange manufactured goods for beaver pelts.
535214730Commonwealth vs. Hunt (1842)Massachusetts Supreme Court decision that strengthened the labor movement by upholding the legality of unions.
535214731Ecological ImperialismHistorians' term for the spoliation of Western natural resources through excessive hunting, logging, mining and grazing
535214735Cult of DomesticityPervasive nineteenth-century cultural creed that venerated the domestic role of women. It gave married women greater authority to shape home life but limited opportunities outside the domestic sphere.
535214738McCormick reaper (1831)Mechanized the harvest of grains, such as wear, allowing farmers to cultivate larger plots. The introduction of the reaper in the 1830s fueled the establishment of large scale commercial agriculture in the Midwest.
535214741Turnpikeprivately funded, toll-based public road constructed in the early nineteenth century to facilitate commerce.
535214744Eerie canalA historic canal that connects the Hudson River at Albany in eastern New York with the Niagara River and the Great Lakes. It opened in 1825.
535214747Molly Maguires (1860s-1870s)Secret organization of Irish miners that campaigned, at times violently, against poor working conditions in the PA mines
535214749Ancient Order of Hibernians (mid 1800s)Irish semi-secret society that served as a benevolent organization for down-trodden Irish immigrants in the U..S.
535214751Pony Express (1860-1861)Short-lived, speedy mail service between Missouri and California that relied on lightweight riders galloping between closely place outposts.
535214753Tammany Hall (est. 1789)Powerful NY political machine that primarily drew support from the city's immigrants, who depended on Tammany Hall patronage, particularly social services.
535214756Know-nothing Party (1850s)Nativist political party, aka the American party, which emerged in response to an influx of immigrants, particularly Irish Catholics.
535214758Transportation revolutionterm referring to a series of nineteenth-century transportation innovation-turnpikes, steamboats, canals, and railroads-that linked local and regional markets, creating a national economy.
535214760Market RevolutionEighteenth and nineteenth century transformation from a disaggregated, subsistence economy to a national commercial and industrial network.
535214762Cotton gin (1793)Eli Whitney's invention that sped up the process of harvesting cotton. The gin made cotton cultivation more profitable, revitalizing the Southern economy and increasing the importance of slavery in the South.
535214764Patent officeFederal government bureau that reviews patent applications. A patent is a legal recognition of new invention, granting exclusive rights to the inventor for a period of years.
535214766Cumberland RoadThe National Road or Cumberland Road was one of the first major improved highways in the United States to be built by the federal government. Construction began in 1811 at Cumberland, Maryland, on the Potomac River
535214768Yellowstone National Parkthe first national park in the United States, created in 1872. Located in the border area between Wyoming and Montana and Idaho; spectacular wilderness; famous for Old Faithful geyser and for buffalo and bears. Once more parks were created, the National Park Service was created by Wilson in 1916
535214770John Jacob AstorFur magnate and founder of a renowned family of Anglo-American capitalists, business leaders, and philanthropists. His American Fur Company is considered the first American business monopoly. Astoria was named after him.
535214772Robert FultonAmerican inventor, engineer, and artist who brought steamboating from the experimental stage to commercial success. He also designed a system of inland waterways, a submarine, and a steam warship.
535214774Cyrus FieldU.S. financier noted for the success of the first transatlantic cable. He was the younger brother of the law reformer David Dudley Field and of U.S. Supreme Court Justice Stephen J. Field.
535214776Dewitt ClintonGovernor of New York who started the Erie Canal project. His leadership helped complete the canal, which boosted the economy greatly by cutting time traveled from west New York to the Hudson.
535214778Cyrus McCormickIrish-American industrialist and inventor who is generally credited with the development (from 1831) of the mechanical reaper.
535214780Samuel SlaterBritish-born founder of the American cotton-textile industry textile. He oversaw construction of the nation's first successful water-powered cotton mill (1790-1793).
535214783Eli Whitneyinventor of the cotton gin
535214785Elias HoweAmerican inventor whose sewing machine helped revolutionize garment manufacture in the factory and in the home.
535214787Issac SingerHelped Howe perfect the sewing machine by making it quicker and brought it to middle class families and large maufacturers.
535214789Samuel F.B. Morsean American painter of portraits and historic scenes, the creator of a single wire telegraph system, and co-inventor, with Alfred Vail, of the Morse Code
535214791John DeereAmerican blacksmith that was responsible for inventing the steel plow. This new plow was much stronger than the old iron version; therefore, it made plowing farmland in the west easier, making expansion faster.
535214793Martin Van Bureneighth president of the United States (1837-41) and one of the founders of the Democratic Party. He was known as the "Little Magician" to his friends (and the "Sly Fox" to his enemies) in recognition of his reputed cunning and skill as a politician.
535214795Corrupt BargainAlleged deal between presidential candidates John Quincy Adams and Henry Clay to throw the election, to be decided by the House of Representatives, in Adams' favor. Though never proven, the accusation became the rallying cry for supporters of Andrew Jackson, who had actually garnered a plurality of the popular vote in 1824
535214797Spoils systempolicy of rewarding political supporters with public office, first widely employed at the federal level by Andrew Jackson. The practice was widely abused by the unscrupulous office seekers, but it also helped cement party loyalty in the emerging two-party system.
535214799Tariff of Abominations (1828)Noteworthy for its unprecedentedly high duties on imports. Southerners vehemently opposed the Tariff, arguing that it hurt Southern farmers, who did not enjoy the protection of tariffs, but were forced to pay higher prices for
535214801Nullification Crisis (1832-1833)Showdown between President Andrew Jackson and the South Carolina legislature, which declared the 1832 tariff null and void in the state and threatened secession if the federal government tried to collect duties. It was resolved by a compromise negotiated by Henry Clay in 1833
535214803Compromise tariff of 1833Passed as a measure to resolve the nullification crisis, it provided that tariffs be lowered gradually, over a period of ten years, to 1816 levels.
535214805Force Bill (1833)Passed by Congress alongside the Compromise Tariff, it authorized the president to use the military to collect federal tariff duties.
535214807Indian Removal Act (1830)Ordered the removal of Indian Tribes still residing east of the Mississippi to newly established Indian Territory west of Arkansas and Missouri. Tribes resisting eviction were forcibly removed by American forces, often after prolonged legal or military battles.
535214809Trail of Tears (1838-1839)Forced march of 15,000 Cherokee Indians from their Georgia and Alabama homes to Indian Territory. Some 4,000 Cherokee died on the arduous journey.
535214812Black Hawk War (1832)Series of clashes in Illinois and Wisconsin between American forces and Indian chief Black Hawk of he Sauk and Fox tribes, who unsuccessfully tried to reclaim territory lost under the 1830 Indian Removal Act
535214814Bank War (1832)Battle between President Andrew Jackson and Congressional supporters of the Bank of the United States over the bank's renewal in 1836. Jackson vetoed the Bank Bill, arguing that the bank favored moneyed interests at the expense of western farmers.
535214816Specie Circular (1836)U.S. Treasury decree requiring that all public lands be purchased with "hard," or metallic, currency. Issued after small state banks flooded the market with unreliable paper currency, fueling land speculation in the West.
535214818Panic of 1837Economic crisis triggered by bank failures, elevated grain prices, and Andrew Jackson's efforts to curb over speculation on western lands and transportation improvements. In response, President Martin Van Buren proposed the "Divorce Bill," which pulled treasury funds out of the baking system altogether, contracting the credit supply.
535214821AlamoFortress in Texas where American volunteers were slain by Santa Anna in 1836. "Remember the Alamo" became a battle cry in support of Texan independence.
535214823Battle of San Jacintofinal battle of the Texas Revolution; resulted in the defeat of the Mexican army and independence for Texas
535214824John Q. Adams (1825-1829)The sixth president of the United States, who was not well-liked by citizens and accused of making a corrupt bargain to win the election. He mainly focused on the economy during his presidency.
535214825Andrew JacksonThe seventh President of the United States (1829-1837), who as a general in the War of 1812 defeated the British at New Orleans (1815). As president he opposed the Bank of America, objected to the right of individual states to nullify disagreeable federal laws, and increased the presidential powers.
535214826Denmark VeseyAmerican insurrectionist. A freed slave in South Carolina, he was implicated in the planning of a large uprising of slaves and was subsequently hanged. The event led to more stringent slave codes in many Southern states.
535214827John C. CalhounThe 7th Vice President of the United States and a leading Southern politician from South Carolina during the first half of the 19th century. He was an advocate of slavery, states' rights, limited government, and nullification.
535214828Black HawkSauk leader who in 1832 led Fox and Sauk warriors against the United States
535214829Nicholas BiddleThe brilliant but arrogant president of the Second Bank of the United States. Many people believed he held an unconstitutional amount of power over the nation's financial affairs. The power struggle between Biddle and Jackson led to Jackson depositing a large amount of investments into his pet banks.
535214830Daniel Websternoted orator, constitutional lawyer, senator, secretary of state, and major spokesman for nationalism and the union in the 1830s, 1840s, and 1850s.
535214831Henry ClayDistinguished senator from Kentucky, who ran for president five times until his death in 1852. He was a strong supporter of the American System, a war hawk for the War of 1812, Speaker of the House of Representatives, and known as "The Great Compromiser." Outlined the Compromise of 1850 with five main points. Died before it was passed however.
535214832Martin Van BurenServed as secretary of state during Andrew Jackson's first term, vice president during Jackson's second term, and won the presidency in 1836
535214833Stephen AustinThe son of Moses Austin and also known as the "Father of Texas" he lead "the old 300" into Texas after his father died of pneumonia. Mexico granted him land on the condition that there would be Roan Catholicism, the learning of Spanish, and no slavery.
535214834Sam HoustonUnited States politician and military leader who fought to gain independence for Texas from Mexico and to make it a part of the United States (1793-1863), First president of the Republic of Texas
535214835Santa AnnaMexican general who tried to crush the Texas revolt and who lost battles to Winfield Scott and Zachary Taylor in the Mexican War (1795-1876)
535214836William Henry Harrisonwas an American military leader, politician, the ninth President of the United States, and the first President to die in office. Led US forces in the Battle of Tippecanoe.

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