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Biology

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AP Biology - What makes up life

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All living things are made up of four classes of large biological molecules: Carbohydrates Lipids Proteins nucleic acids Macromolecules are large molecules composed of thousands of covalently connected atoms Molecular structure and function are inseparable A polymer is a long molecule consisting of many similar building blocks These small building-block molecules are called monomers Three of the four classes of life?s organic molecules are polymers: Carbohydrates Proteins Nucleic acids A condensation reaction or more specifically a dehydration reaction occurs when two monomers bond together through the loss of a water molecule Enzymes are macromolecules that speed up the dehydration process

Anatomy - Muscle Notes

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Myology - study of muscles Kinesiology- study of movement of human body Types of muscle tissue - differ from one another by microscopic anatomy, location, and control by the nervous systemMyology skeletal muscle - (striated) attached to bone, multi-nucleated, voluntary\ cardiac muscle - only in heart, striated, 1-2 nuclei, involuntary smooth muscle - (visceral) walls of hollow internal structures, non-striated, one nucleus, involuntary Functions of Muscle Tissue locomotion - movement of the body motion - movement of substances within the body maintenance of posture thermogenesis - muscle contractions produce 85% of all body heat Organization of Skeletal Muscle all skeletal muscle is protected by deep fascia, which surrounds the muscle and holds muscle tissue together

ATP Production

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Mitochondria and Oxidative Phosphorylation Controlled oxidation of sugars Breaks down sugar in a number of small stepwise events = more efficient NADH and FADH2 carry energy in the form of high energy electrons Produce these molecules as a way to transport high energy electrons (Energy is stored as redox potential) These electrons will be transferred to the electron transport chain Glycolysis occurs in a stepwise process NADH is an energy carrier (energy will be harvested later) Some ATP is produced directly Most of the energy is still stored in pyruvate molecules Citric acid/tricarboxylic acid/Krebs cycle Oxidize pyruvate Yield for every 2 molecules of acetyl CoA: 2 GTP + 2 FADH2 + 6 NADH + 4 CO2

Cell Cycle Regulation

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REGULATION OF THE CELL CYCLE - 4/19 THE CELL CYCLE the cell reproduces by carrying out an orderly sequence of events in which it duplicates its contents and divides 2n replicate form mitotic spindle Chromosome segregation division In eukaryotes, the cell cycle is divided into four phases Interphase Restriction point I--------------------------I--------------------------I--------------------------I--------------------------I G1 S G2 M 1) Should I divide? Synthesis, 1) DNA replication Mitosis No, Can stay here DNA replication successful? Cell signaling tells it CHECKPOINT if it can divide How do cells know when to enter mitosis?

Signal Transduction Mech

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Signal Transduction Mechanisms 4/12/16 Yeast Can be diploid or haploid If a cell can recognize the presence of another cell nearby it develops a schmoo which allows the cells to mate Cell communication is more complicated in multicellular organisms Multiple potentials before differentiation Communication is crucial Signal transduction moves information from the cell surface to the nucleus & other cellular targets Converts an outside message into a change in cell behavior Signal transduction Extracellular signal is converted to intracellular signals that direct cell behavior Cell communications depends on: Extracellular signal molecules Receptor proteins Intracellular signaling proteins Target proteins What type of molecules can be used as extracellular signals? Proteins

Endo-membrane System

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Endomembrane system 4/7/16 Proteins synthesized in the ER enter the endomembrane system Comprises a transport system whereby material flows between the ER, Golgi, endosomes, lysosomes, and the plasma membrane REMEMBER: Rough ER is involved in biosynthesis and processing of proteins Smooth ER is involved in drug detoxification, carbohydrate metabolism, steroid biosynthesis Network of small tubes Both water-soluble and transmembrane proteins are co-translated: Soluble ? completely translocated across the ER membrane into the lumen Default pathway = SECRETION Transmembrane ? partly translocated and will reside in the membrane Default pathway = PLASMA MEMBRANE Most proteins that enter the endomembrane system get glycosylated cytosolic proteins are generally not glycosylated

Protein Sorting

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Protein Sorting 3/29/16 Organelles contain sets of proteins that are specific to their functions What is the function of the following organelles, and what types of proteins might be found in them? Nucleus? Transcription - RNA polymerase Transcription - transcription factor Replication - Mitochondria? ATP synthesis - ATP synthase Golgi? Synthesis of most proteins begins on ribosomes in the cytosol Cytosol - everything inside the cell that is not enclosed by membrane How are proteins delivered to the correct location? Signal sequences direct proteins to the correct compartment Short (15-60 aa) sequence in protein, specifies where it should go Inherent sequence coded for in the DNA information EX- NLS: nuclear localization signal Signal sequences function like zip codes!

Cytoskelaton

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3/22/16 Cytoskeleton - a system of protein filaments that extend through cytosol The cytoskeleton helps support the large volume of cytosol inside a cell Most prominent in eukaryotic cells However, unlike our static skeleton, the cytoskeleton is dynamic Cytoskeletal filaments are made of noncovalently-linked subunits *allows for rapid assembly and disassembly* Filaments can disassemble and reassemble in different locations in cell Cytoskeleton Functions maintains cell SHAPE & RIGIDITY A framework connecting the plasma membrane to the organelles CELLULAR MOVEMENT MOTILITY: whole cell i.e. amoeba or sperm ? cilia/flagella intracellular structures - chromosomes, vesicles CONTRACTILITY - movement involving contraction of a cell muscle - tissue, cleavage furrow.

Translation

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RNAs as Intermediates in the Flow of Genetic Information Transcription by DNA dependent RNA polymerase RNA processing - pre RNA RNA Translation protein processing polypeptide protein RNAs function in RNA processing: snRNA snoRNA RNAs function in translation: mRNA, tRNA rRNA TRANSLATION - The mRNA sequence is translated into a polypeptide (sequence of amino acids) which is then modified, folded and transported to the cellular compartment where it will assemble with other macromolecules and function as a protein. Nirenberg and Matthei used synthetic mRNA AND an in vitro protein synthesizing extract synthetic mRNA + cell-free extract + radioactive amino acid (one at a time) Poly (U) ~ (UUUUUU) - Phe AAAAAA - Lys CCCCCCC- Proline Some codons were initially ambiguous?

Transcription

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DNA Transcription (Slide 20) The ?Central Dogma? - Crick 1958 DNA - RNA - Protein Proposed that this process could not go backwards The part of DNA that encodes for a protein (or RNA) is called a gene GENE: Functional unit of DNA that codes for one or more polypeptide chains or an RNA molecule Genome is not just genes, there are intervening sequences that don?t code for a protein Proteins are generated through transcription and translation How much protein is present can be regulated by the amount of transcription and/or translation Beta-catenine- high abundance in brain (A) but low abundance in muscle (B) DN A is transcribed by RNA polymerase One RNA polymerase in bacteria that does all the transcription CORE ENZYME: 2?, 1?, 1??

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