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Biology

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DNA Transcription (Slide 20) The ?Central Dogma? - Crick 1958 DNA - RNA - Protein Proposed that this process could not go backwards The part of DNA that encodes for a protein (or RNA) is called a gene GENE: Functional unit of DNA that codes for one or more polypeptide chains or an RNA molecule Genome is not just genes, there are intervening sequences that don?t code for a protein Proteins are generated through transcription and translation How much protein is present can be regulated by the amount of transcription and/or translation Beta-catenine- high abundance in brain (A) but low abundance in muscle (B) DN A is transcribed by RNA polymerase One RNA polymerase in bacteria that does all the transcription CORE ENZYME: 2?, 1?, 1??

DNA Replication II

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DNA Replication a strand of DNA serves as a template for replication: complementary strain Meselson & Stahl use density centrifugation to determine method of replication grew bacterial in two different weights of Nitrogen media so the nitrogen bases have different weights switched media ruled out conservative replication need to separate strands to determine determined semi-conservative method is the true method replication begins at origin of replication bacterial and yeast: typically begin at high concentration of A/T point because there are only two hydrogen bonds between Adenine and Thymine whereas Guanine and Cytosine have three hydrogen bonds between them origin is 100-150 bp long 11-nucleotide core sequence of adenine and thymine and flanking adenine and thymine regions

DNA Replication I

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DNA Replication As the genetic information, DNA must be faithfully replicated and passed down to the next generation The structure of DNA immediately suggested a replication mechanism A strand of DNA can serve as a template for replication If you know one strand, you can determine the other What is the mechanism of replication? Meselson & Stahl used density centrifugation biomolecules will float or sink until they reach the point at which their density equals that of the gradient Meselson and Stahl?s results did not support the conservative replication model Using the same approach as Meselson and Stahl, how could you distinguish between these models? DNA replication initiates at Origins of Replication

Amino Acid II

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Nucleic Acids, DNA Structure, and Chromosomes Nucleotides are the building blocks of nucleic acids One (NMP), two (NDP), three (NTP) phosphates 5 different bases: A, G, C (DNA and RNA), T (DNA), U (RNA) 2 different sugars: ribose (RNA), deoxyribose (DNA) Two kinds of 5-carbon sugars Five kinds of nitrogen containing bases The sugars and bases are linked through a glycosidic bond nucleoside = N-containing base linked to a 5 carbon sugar (no phosphate) nucleotide = N-containing base linked to a 5 carbon sugar & one or more phosphates Nucleotides are linked through phosphodiester bonds Link between nucleotides: 5? C of sugar - phosphate- 3? C of sugar (backbone) Variable portion: base

Amino Acid I

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Nucleic Acids, DNA Structure, and Chromosomes Nucleotides are the building blocks of nucleic acids One (NMP), two (NDP), three (NTP) phosphates 5 different bases: A, G, C (DNA and RNA), T (DNA), U (RNA) 2 different sugars: ribose (RNA), deoxyribose (DNA) Two kinds of 5-carbon sugars Five kinds of nitrogen containing bases The sugars and bases are linked through a glycosidic bond nucleoside = N-containing base linked to a 5 carbon sugar (no phosphate) nucleotide = N-containing base linked to a 5 carbon sugar & one or more phosphates Nucleotides are linked through phosphodiester bonds Link between nucleotides: 5? C of sugar - phosphate- 3? C of sugar (backbone) Variable portion: base

Proteins and Lipids

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LIPIDS & MEMBRANE STRUCTURE Lipids differ from the other macromolecules: not formed by linear polymerization however, they do have a high molecular weight they contribute to important cellular structures (membranes) What are they? Heterogeneous category of cellular components that are insoluble in water (hydrophobic) Lipids are typically rich in nonpolar hydrocarbon regions with relatively few polar groups Lipids have 3 main cellular functions: 1. Energy storage (fat to sugar) Lipids have about 6 times more energy than the same weight of a polysaccharide 2. Membrane structure 3. Transmission of chemical signals There are six main classes of lipids (FAMILIARIZE WITH THE FIRST 3) Fatty acids are the building blocks for several other kinds of lipids

Protein function and enzymes

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Protein Function and Enzymes Most proteins function by binding to other molecules Antibody - aggregating foreign Actin - binding to itself Enzymes Hexokinase - binding pocket for glucose, then catalyze Selectivity comes into play based on functional groups Proteins bind other molecules at the binding site Unique chemical environment Not only based on agreeing shape, but also non-covalent bonds In some cases this binding is very tight; in others it is weak and short lived. The binding site is a cavity on the surface created by several amino acids that interact with the substrate Chemical identity of function groups that dictates what molecules will bond Protein binding to another molecule is highly selective Thermal energy causes not matching molecules to dissociate

Proteins

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Chemical Components of Cells Part II- Protiens 1.19.16 Proteins are composed of amino acids General structure of an amino acid where R is one of twenty different side chains At pH=7, both the carboxyl and amino groups are polarized In cell, cytosol will always make it ionized Amino acids are linked together by peptide bonds R Groups have different chemical properties: Be able to decide if each R-group is hydrophobic or hydrophilic Proteins are folded polymers of amino acids Primary - linear Secondary - alpha or beta Tertiary - combination of alpha and beta, globular Quaternary - combination of globular structures Folding of protein determines function Most proteins adopt a single highly preferred conformation

Intro to Cells

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Bio 230: Cell Bio Intro to Cells: pg 1-26 Properties that define living organisms: Ability to reproduce on their own Viruses? Not living organisms but incapable of reproducing on their own Can grow and develop Require energy - metabolism Response to the environment Maintain homeostasis Contains genetic information (DNA or RNA) Composed of cells Cells are the fundamental unit of life. Invention of the light microscope led to the discovery of cells Robert Hooke Shortened telescope Many flaws, difficult to see Oil lamp with flask of water to illuminate specimen Examined cork - coined term cell Remains of cell walls after death Theodore Schwann All different species of animals were composed of cells Mathias Schleiden All different species of plants were composed of cells

Bio 220 Principles of Physiology and Development

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Bio 220 Notes Prokaryotes: 3.2 billion years ago Cell wall = peptidoglycans gram neg - lipopolysaccharides secreted outside of cell wall No internal compartments Unicellular and small (1-5 um) Most have single chromosome Transcription and translation occurs in the same location Eukaryotes: 2.1 billion years ago compartmentalization = organelles you can be more efficient with reaction vessels (concentrate functions) You can get by with fewer enzymes if you concentrate them into organelle, its cheaper Endosymbiants Mitochondria divide at their own rate, replicate independently of cell they live in Has its own DNA, circular First endosymbiants Cell size varies greatly RBC are the smallest and neurons are the largest/longest Plasma Membrane

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